Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1640 ATGGAACCTGACATGTTTCTTCTGGGGAACGATCGAAATTCCGAGGCTAACTCAACGATCAACCGTCTGGAGGGGAAGCTTGTGTTTCATAATATTGGATCATCGAACAACAACCAAGCATGCAATTCATCCTCCGTTATGGCAGATTCGAGCAGCGCGTGTGGCCACCATAATCTATCCTTCTATAACAAAATAGAGAATGAAAAATGGATGTCTAATTCAAATGTGAGGTTAACGAGAAAAATGATGAGCCAATCTAGCAGCGGTCTAGCTGCAAAGAAGAAAGTGTTCAATAATAATATTATTAGGGTTTGTGCGGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGCGGCATTCGACAGAGGAAGGCAAGAAGGGCAATGGATGAAGCTGTGAAGCCTTCCATGAATATGAATGCATCTTCTACAAAGACCAGAGTGCATAACAAGGAAAAGAAATCTCGTGCAAACCACTTAGCACGATCCAAGAATAATAAGTGCAAGGCAACCACTGCTGCAGGAACATCTCAGCAGGAGAAAATCAAGATTGATTTTAAGGATTTTGCTATAAGTTTAAGGGATAATTCGGCTTTGAACCAAGTACTGTTTCCAATGGATGAAGTAGCTGAGGCCGCGCTGCTTCTCATGGATTTATCTTCTGGCTTTGTTTACTTTTAA 717 0.4226 MEPDMFLLGNDRNSEANSTINRLEGKLVFHNIGSSNNNQACNSSSVMADSSSACGHHNLSFYNKIENEKWMSNSNVRLTRKMMSQSSSGLAAKKKVFNNNIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMDEAVKPSMNMNASSTKTRVHNKEKKSRANHLARSKNNKCKATTAAGTSQQEKIKIDFKDFAISLRDNSALNQVLFPMDEVAEAALLLMDLSSGFVYF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1640 238 Gene3D - 102 181 IPR013088 GO:0006355|GO:0008270
Aed4g1640 238 MobiDBLite consensus disorder prediction 161 175 - -
Aed4g1640 238 Pfam GATA zinc finger 105 138 IPR000679 GO:0006355|GO:0043565
Aed4g1640 238 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 30 236 - -
Aed4g1640 238 CDD ZnF_GATA 104 141 IPR000679 GO:0006355|GO:0043565
Aed4g1640 238 ProSitePatterns GATA-type zinc finger domain. 105 130 IPR000679 GO:0006355|GO:0043565
Aed4g1640 238 MobiDBLite consensus disorder prediction 153 186 - -
Aed4g1640 238 SMART GATA_3 99 150 IPR000679 GO:0006355|GO:0043565
Aed4g1640 238 ProSiteProfiles GATA-type zinc finger domain profile. 103 135 IPR000679 GO:0006355|GO:0043565
Aed4g1640 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 145 - -
Aed4g1640 238 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 30 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1640 Aed-Chr4 21057617 21062141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1640 69 237 C2C2-Gata Transcription Factor Family AT4G26150 38.942 2.72e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed4g1640 GATA 3.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1640 - - gmx:102659929 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1314 6 17891313 17892442 Aed4g1640 4 21057617 21062141 PCT