Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1634 ATGTTGATGGAGAGTGATATGTACACTGCTGCACTTGACATTTCTGGCCGAGATGCTGCAGTAATAGATGAAATTTCCCAACATTCCACCCCAAATGCTCTCATTCAATGCTATTCACTTGACCTTAACAACCAATCCCATATCATAAACGGAATTTCAATGCTTTCTGGAGAGCAATGTGAACCTATAAATAATGTCCATGTCCATGCTAATGCTTGCTTCATTAATCCTTCAATTATTTCTGACTCTAGTCCATTAGTTACATCACAAGGAAAGACTATTGTGGGAGATGCCTCAAATCCCATGGAGAACACTGATCTTCAAGAACATTTAGTTGGAGGAATGCCAATTACTCCATCTTCCCTTGCTGCCATTCTTGCTGCAAGAATTGGTCTTGAAGATAATTTAGAGAATTCATCAGCCTTGCCTCCCTCCCTCTGCTCAATGGGGGCACTGGGGGCATTCTTCAACAATTTGCAAGGTACTTCAAATTCAAACCCTTTTGAGGACTGTGGTGGTTACAATGAAGTTCCTAGTAACAAGTGGAATGCTAACAAGTTTTTTTCTAAAGCTCCAGAGATTGATGGAACTGTGTGTCAGCCTTATTCTTCTGTAGCAAATCTTGATCCAAATGAATGGACATCAACAAATCTTGCAAACAATATGGCCAATTATGCTTACCATTCCTCTAGCTTTAGTAAAAAACTTTCTCTGAGTCTTGCAACATCTACAACCGCAGGACAGTGCTCCGAAGTGAGTTGCTCTAACAATAATGTGACCCCATGCATGAATGGGACCATGTCAGGCTTGGAGCGAGCCTCCTGCAGCAGTAATAGGGAACTTTCTATGAATTTGGGTGGTAATAAATATGTACATTTTACACCAGAAGTACTGGAATCGAGATATCTCGTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTAGGTGCTGGTAATAGAGCAGGTGGAAACAAGTCAAGTTCAGCTTTCCCACCCAAGAGAAAGATACTGATAGATCACAATGCAAATAATTCTATGTATGAGTCTCCATTGCCAAGGCATGCTGCTGAATCAAAGAAATCCCAACTCTTGACACTTCTACAGCTGGTAGATACTCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCACGCTGCTACAGAGCTGGACCCGCAAATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACCTACGAGAGAGGATCAGCAGTTATATTCTAGCCATGGGATCAAATTTCAACAACTCGTCGTGCTCCGAAGATAATAATGAATGGTCCGTTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGTTGTGGAGGCCCCAAAGAGGCTTGCCAGAAAGATCCGTCTCGGTTCTACGTGCTTGGATGTTTCAGAATTTCCTGCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTAACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAATAAAAGAAAGGCTTGTCGAAATGAAGAAGGAATGCAGGGCAACCACGGAAACAGGATAACCATGACCAATCAAAGGTTTAATCACTGTTAA 1710 0.4129 MLMESDMYTAALDISGRDAAVIDEISQHSTPNALIQCYSLDLNNQSHIINGISMLSGEQCEPINNVHVHANACFINPSIISDSSPLVTSQGKTIVGDASNPMENTDLQEHLVGGMPITPSSLAAILAARIGLEDNLENSSALPPSLCSMGALGAFFNNLQGTSNSNPFEDCGGYNEVPSNKWNANKFFSKAPEIDGTVCQPYSSVANLDPNEWTSTNLANNMANYAYHSSSFSKKLSLSLATSTTAGQCSEVSCSNNNVTPCMNGTMSGLERASCSSNRELSMNLGGNKYVHFTPEVLESRYLVGIQEILAQIARYSFENLGAGNRAGGNKSSSAFPPKRKILIDHNANNSMYESPLPRHAAESKKSQLLTLLQLVDTRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKDLRERISSYILAMGSNFNNSSCSEDNNEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGMQGNHGNRITMTNQRFNHC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1634 569 CDD homeodomain 470 531 IPR001356 GO:0003677
Aed4g1634 569 Pfam Homeobox KN domain 487 526 IPR008422 GO:0003677|GO:0006355
Aed4g1634 569 ProSiteProfiles 'Homeobox' domain profile. 467 530 IPR001356 GO:0003677
Aed4g1634 569 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 566 - -
Aed4g1634 569 SMART prehox3 291 426 IPR006563 -
Aed4g1634 569 MobiDBLite consensus disorder prediction 553 569 - -
Aed4g1634 569 Pfam Associated with HOX 297 425 IPR006563 -
Aed4g1634 569 PANTHER HOMEOBOX PROTEIN ATH1 12 566 - -
Aed4g1634 569 MobiDBLite consensus disorder prediction 548 569 - -
Aed4g1634 569 Gene3D - 473 552 - -
Aed4g1634 569 SMART HOX_1 470 534 IPR001356 GO:0003677
Aed4g1634 569 SUPERFAMILY Homeodomain-like 472 539 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1634 Aed-Chr4 21031617 21033700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1634 235 543 Homeobox Transcription Factor Family AT4G32980 56.013 2.87e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aed4g1634 POX 4.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1634 - - gmx:100820354 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1634 4 21031617 21033700 Aed4g1634 4 21031617 21033700 ECH
Aed6g0449 6 3924069 3926638 Aed4g1634 4 21031617 21033700 PCT