Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1622 ATGATCCCAAACGTTGAAATCCCTCCCTGGGACGACGGCGACGGAGGAGCAATCTCCCCTTGCTCGTTCTCCTCAGACCATTTCCGAATGTTCCAGTTCAAGGTGCGGAGCTGTTCACGTGGCAGGTCCCACGACTGGACGGAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGCCGTGACCCTCGAAAGTACCTCTACTCCGGCACGGCGTGCCCTGATTACCGGAAGGGGAACTGCATGAGGGGAGACACGTGTGAGTTCGCGCACGGCGTGTTCGAATGCTGGCTCCATCCCTCACGCTACCGGACCCAGCTCTGTAAAGACGGAACCAGTTGCCGCCGCAGAGTGTGCTTCTTCGCTCACACCAACGACCAACTCCGCGTCGTAACGGAATCATCATCGTCTCCCACTTCGGTCATTAACTCAGCTTTCTTCGATTCGCCACCCTCTTCGCCGTACGGCATCGTACATATAGTTAACGCAATGCGGAGTGTTGAGTTAGACGAAAGGGGTTTGAGACCATCTTTTTGGCACACTATTCATCTATTGTATGAAGTAGAAAGCAGACATTGTTTATCTACAGATTTCGCAATTGCAGTGTTTGAAATCTGTGTTACAGGTGCGGCGGGCGAAGTTTTTGTAATGGCTTCTTTTTTGTTTACAGAAGGAAAGGACGAAAAGGTTACTCGAGTTGGGAGATATGCTGTTATGGAGTGCTGCGTGGAACAATGCCATTATGCCATCGAGATTATCCATCAACAATCACAATCCACACAGCACATGAAAGGTTTCTTCACGAAGCAAGATCTATATTTAGGATAG 828 0.5121 MIPNVEIPPWDDGDGGAISPCSFSSDHFRMFQFKVRSCSRGRSHDWTECPYAHPGEKARRRDPRKYLYSGTACPDYRKGNCMRGDTCEFAHGVFECWLHPSRYRTQLCKDGTSCRRRVCFFAHTNDQLRVVTESSSSPTSVINSAFFDSPPSSPYGIVHIVNAMRSVELDERGLRPSFWHTIHLLYEVESRHCLSTDFAIAVFEICVTGAAGEVFVMASFLFTEGKDEKVTRVGRYAVMECCVEQCHYAIEIIHQQSQSTQHMKGFFTKQDLYLG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1622 275 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 92 IPR000571 GO:0046872
Aed4g1622 275 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Aed4g1622 275 Gene3D - 66 131 - -
Aed4g1622 275 SUPERFAMILY CCCH zinc finger 66 96 IPR036855 GO:0046872
Aed4g1622 275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 22 155 - -
Aed4g1622 275 PANTHER UNKEMPT FAMILY MEMBER 22 155 IPR045234 -
Aed4g1622 275 SMART c3hfinal6 102 125 IPR000571 GO:0046872
Aed4g1622 275 SMART c3hfinal6 67 93 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1622 Aed-Chr4 20941778 20944559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1622 23 137 C2H2 Transcription Factor Family AT5G12850 66.957 2.39e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g1622 zf-CCCH 9.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1622 - - gmx:100811289 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1622 4 20941778 20944559 Aed4g1622 4 20941778 20944559 ECH