Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1620 ATGGAGGAATACAGCAATAATAATCACCTGAGTCCAAGGGAAAATTTGTTGTACTCCCTGGCTAGTGGTGGTTCAAGCGTAGGAAACCGCCACCACCAGCTTCCATTGAACATCTTTCATTTTCAATCGGGTGGATCGGATCACTGTTTTCAACCCAATGATCAAGCACCACACCCTGGTGTGAAAACCGAGTCCCACCTCCACTATCCTCTAATGAGATCAAATCTTCCCCACATACTACTGCATCCTCAGCAAGGAGCTGCGAGCCAGAGCTCTAACCAAGAAATTGAAGCCATAAAAGCCAAAATCATTGCCCATCCTAACTACTCCAATCTTTTACATGTTTACTTGGATTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGTGGCGCGTTTGGCCACGGTTATACAGGATTTTGAGGCACGGCAGCGATCTATGGTTAGGTCTAGGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGGGAGGAATTAACGAGGCCTATAGAAGAGGCTAAGGATTTCATGTGGAGAATAGAAACGCAGCTGAACGCGCTTTGCAATGGAACCGTGCGGATCTTCTCTGATGATAAGTGGGAAAACATTGGTTCATCGGAAGAGGATGAAGAGAAGAGTGGCGGAGAAGGAGAAAGAGAATTGACGTCGGAGATTGGTCCCGGGGCAGAAGACCGAGAACTGAAAAGCCAGTTGCTGAAGAAGTACCGTGGCTACTTAGGTAGCCTTAAGAAAGAACTTTCTAAGACAAAGAAAAAAGGAAAACTACCTAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGGATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCGCTGGCTGAAGCAACTGGTTTGGATCAGAAGCAAATAAATAATTGGTTCATAAATCAAAGGAAGCGGCATTGGAAACCATCGGTGGACATGCAATTTATGGTTATGGAAGGCCTGCATACGCAGAACGCAACTCTCTATATGAATGCCCACTACATGCATGGCTGA 1065 0.4573 MEEYSNNNHLSPRENLLYSLASGGSSVGNRHHQLPLNIFHFQSGGSDHCFQPNDQAPHPGVKTESHLHYPLMRSNLPHILLHPQQGAASQSSNQEIEAIKAKIIAHPNYSNLLHVYLDCQKVGAPPEVVARLATVIQDFEARQRSMVRSRETCKDPELDQFMEAYYDMLVKYREELTRPIEEAKDFMWRIETQLNALCNGTVRIFSDDKWENIGSSEEDEEKSGGEGERELTSEIGPGAEDRELKSQLLKKYRGYLGSLKKELSKTKKKGKLPKDARQKLLSWWGLHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSVDMQFMVMEGLHTQNATLYMNAHYMHG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1620 354 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 13 350 - -
Aed4g1620 354 SMART ELK_2 243 264 IPR005539 GO:0003677
Aed4g1620 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 350 - -
Aed4g1620 354 Gene3D - 268 330 - -
Aed4g1620 354 CDD homeodomain 275 327 IPR001356 GO:0003677
Aed4g1620 354 SUPERFAMILY Homeodomain-like 265 335 IPR009057 -
Aed4g1620 354 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677
Aed4g1620 354 Pfam ELK domain 243 264 IPR005539 GO:0003677
Aed4g1620 354 Pfam KNOX2 domain 152 198 IPR005541 GO:0003677|GO:0005634
Aed4g1620 354 Pfam KNOX1 domain 98 139 IPR005540 GO:0003677|GO:0005634
Aed4g1620 354 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677|GO:0006355
Aed4g1620 354 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Aed4g1620 354 MobiDBLite consensus disorder prediction 213 237 - -
Aed4g1620 354 SMART HOX_1 265 330 IPR001356 GO:0003677
Aed4g1620 354 ProSiteProfiles ELK domain profile. 243 263 IPR005539 GO:0003677
Aed4g1620 354 SMART KNOX2_2 148 199 IPR005541 GO:0003677|GO:0005634
Aed4g1620 354 ProSitePatterns 'Homeobox' domain signature. 301 324 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1620 Aed-Chr4 20927083 20931921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1620 46 352 Homeobox Transcription Factor Family AT4G08150 61.801 9.93e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed4g1620 KNOX2 3.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1620 - - gmx:100798133 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1620 4 20927083 20931921 Aed4g1620 4 20927083 20931921 ECH