Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1619 ATGGCCTTTGATATTTCTAACCCAGGGCTTCGACTTGCTCTTGGTCTCCATGATGATCACTCATCAGACATGAAGAGCGATGAACAAAGGCAAAGCCAGAAGAAAAAAGCGGCTTACCCATCACTTACGTTAGGACCACCCTATGATGAGGCAAACAATAACCAACAAATTACAAAGACTGAATCCAGTGCAGTGTCTTCATTCTCCAACTCATCTAGTATCATCAAGAGAGAGAGAAAAGAACTTGAGTTAGGGGTAGAGAGGATTCCGTCGTCAAGGGTTGACGAAAATGGTAACCCCAAGAAGAAACTTAGGCTCACCAAACAACAATCTGCAGTCTTAGAAGATATCTTCAAAGAACATTCTACTCTCACTCCGAAACAGAAGCAAGAATTGGCAAAGAAACTGAATCTGCGGACTAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAACTGAAACAAACCGAAGTGGACTATGAGTCACTGAAAAAGTGGTGTGATACTCTAAGTGAGGAGAACAAGATGCTGGAAAAAGAGTTGCAAGAGCTTAAATCGATTATGGGACCCTTTTATATGCAGCTTCCAGTTCCAGAGTCAACAATATTATGCCCTTCGTGTCAGAGAAACAATGGCTCTTCTCCCACAACGGCTTTGCTTGTAGGCCCAAAGGCCCATCATGACCAGCACTTCTATAAAAATAACTACACCTTCACCCAATCATCCGCAGCTTGCTAA 747 0.4337 MAFDISNPGLRLALGLHDDHSSDMKSDEQRQSQKKKAAYPSLTLGPPYDEANNNQQITKTESSAVSSFSNSSSIIKRERKELELGVERIPSSRVDENGNPKKKLRLTKQQSAVLEDIFKEHSTLTPKQKQELAKKLNLRTRQVEVWFQNRRARTKLKQTEVDYESLKKWCDTLSEENKMLEKELQELKSIMGPFYMQLPVPESTILCPSCQRNNGSSPTTALLVGPKAHHDQHFYKNNYTFTQSSAAC 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1619 248 SMART HOX_1 99 161 IPR001356 GO:0003677
Aed4g1619 248 SUPERFAMILY Homeodomain-like 95 158 IPR009057 -
Aed4g1619 248 Pfam Homeobox associated leucine zipper 157 190 IPR003106 GO:0006355|GO:0043565
Aed4g1619 248 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Aed4g1619 248 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 8 247 - -
Aed4g1619 248 Gene3D - 93 163 - -
Aed4g1619 248 Coils Coil 163 190 - -
Aed4g1619 248 MobiDBLite consensus disorder prediction 14 53 - -
Aed4g1619 248 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Aed4g1619 248 MobiDBLite consensus disorder prediction 16 34 - -
Aed4g1619 248 CDD homeodomain 100 158 IPR001356 GO:0003677
Aed4g1619 248 Pfam Homeodomain 101 155 IPR001356 GO:0003677
Aed4g1619 248 SMART halz 157 198 IPR003106 GO:0006355|GO:0043565
Aed4g1619 248 PANTHER - 8 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1619 Aed-Chr4 20922966 20925144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1619 4 212 Homeobox Transcription Factor Family AT4G37790 50.213 1.03e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed4g1619 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1619 K09338 - gmx:100790927 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1619 4 20922966 20925144 Aed4g1619 4 20922966 20925144 ECH