Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1609 ATGAAGCGCATCATGAATGAGAGTAATACCAACACCACCGATGATGGAAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGTTACTTCAGCAGCCACTGTTCCGACAACCTACTACATGTCCCCTTCTCACATGTCCAACTCCGGAATGTGTTACGGTGTCGGGGAAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCCCTCAAGTCCGATGGGTCACTTTGCATCTTGGAAGCTCTCAATAGATCACAAACGCAAGTGATGGTGCCAACTTCGTCTCCGAAATTGGAGGACTTCCTAGGTGGTGCAACTATGGGAACTCACGAATATGGAAGCCACGAGAGAGGTTTGAGCCTAGACAGCATCTATTATAACTCCCAAAACGCAGAAGCTCAACCCAACAGAGACCTTCTTTCACAACCCTTCAGGCAACAAGGGCATATGAATGTCCAAACACACCCTTATTATTCTTCAGGACTTGCTTGCCATGGAATGTATCAAGCACCATTGGAAGATGAAACAACAAAGGAAACGCACGTTTCAGTTTGCAGCTCCTTAATGCCTCAAATGACAGAAGAAGAAGGTTTTAGAAACTGGGGGGTTGCTCCTCAAAGGGAGTATTCAACTCATCAGCAGGTTCTGGAGCAGCAAATAAACTGTGGAATGGGAAATGAGAGAAGTGGCGTGTCTCTAGGAACTGTGGGGTGTGGAGAGTTACAGTCTCTAAGCTTATCCATGAGTCCTGGCTCTCAGTCTAGTTGTGTCACTGCTCCTTCTGCCACAGATTCTGTAGCTGTGGAAGCAAAGAAGAGAGGGCATGCTAAGTTGGGTCAGAAACAACCGGTGCATAGGAAATCTATTGACACATTTGGGCAAAGAACGTCGCAGTATAGAGGCGTCACAAGGCATAGGTGGACTGGTAGGTATGAGGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGATCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTTCGATTGAAAATTACCAAGTTCAGCTTGAGGAAATGAAGAACATGAGCAGGCAGGAATACGTTGCACACTTGAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCGATATACAGAGGGGTCACTAGGCATCACCAACACGGTAGATGGCAAGCAAGGATAGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCAGAAGCATACGATGTTGCGGCAATCAAATTCCGCGGCGCAAATGCAGTCACAAACTTTGACATTTCGAGATACGATGTCGAGAGAATCATGGCCAGTAGCAATCTTCTCGCTGGGGAGCATGCAAGGCGTAACAAAGATAACGATCCAAGAAACGAGGCCATTGACTACAACAAGAGTGGTGTAGTAACCTCAAGTGTTAACATTGAGGAAACGGTTCACGCAAGAAACAACAGCAATGAAAACGATTCGGAGTGGAAGAAGATGGTTCTGTTTAATGGCACTGGTAGTAGTAGTAATGACCAAAAAATAATGAACTACGGAAATTATAGAAACAGTGCATTTTCTATGGCCCTACAAGATCTCATTGGGTTTGATTCGGTTGGGGGTTCTCAGCAGCATATGCTGGAGGAGTCTAATAGCAAAATTGGAACTCATTTTTCAAACCCGTCCTCGCTGGTTACGAGTTTAAGCTCTTCAAGAGAGGCTAGTCCTGATAAAACGGGTCCATCGCTTCTGTTCCCAAAGCCTCCAATGGAAACAAAGATAGTGAACCCCATTGGTACCTCTTGGTTACCCTCACCAACGGTTCAAATGAGGCCAGCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACCGATACTTAA 1977 0.4573 MKRIMNESNTNTTDDGNNHNWLGFSLSPHMKMEVTSAATVPTTYYMSPSHMSNSGMCYGVGENGNFHSPLTVMPLKSDGSLCILEALNRSQTQVMVPTSSPKLEDFLGGATMGTHEYGSHERGLSLDSIYYNSQNAEAQPNRDLLSQPFRQQGHMNVQTHPYYSSGLACHGMYQAPLEDETTKETHVSVCSSLMPQMTEEEGFRNWGVAPQREYSTHQQVLEQQINCGMGNERSGVSLGTVGCGELQSLSLSMSPGSQSSCVTAPSATDSVAVEAKKRGHAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARSYDLAALKYWGPSTHINFSIENYQVQLEEMKNMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASSNLLAGEHARRNKDNDPRNEAIDYNKSGVVTSSVNIEETVHARNNSNENDSEWKKMVLFNGTGSSSNDQKIMNYGNYRNSAFSMALQDLIGFDSVGGSQQHMLEESNSKIGTHFSNPSSLVTSLSSSREASPDKTGPSLLFPKPPMETKIVNPIGTSWLPSPTVQMRPAPAISLSHLPVFAAWTDT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1609 658 CDD AP2 401 462 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 SUPERFAMILY DNA-binding domain 401 462 IPR016177 GO:0003677
Aed4g1609 658 ProSiteProfiles AP2/ERF domain profile. 402 460 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 SUPERFAMILY DNA-binding domain 302 368 IPR016177 GO:0003677
Aed4g1609 658 MobiDBLite consensus disorder prediction 581 605 - -
Aed4g1609 658 PRINTS Ethylene responsive element binding protein signature 304 315 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 PRINTS Ethylene responsive element binding protein signature 442 462 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 MobiDBLite consensus disorder prediction 581 617 - -
Aed4g1609 658 Pfam AP2 domain 402 452 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 Pfam AP2 domain 303 358 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 SMART rav1_2 303 372 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 SMART rav1_2 402 466 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 17 656 - -
Aed4g1609 658 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 656 - -
Aed4g1609 658 ProSiteProfiles AP2/ERF domain profile. 303 366 IPR001471 GO:0003700|GO:0006355
Aed4g1609 658 Gene3D AP2/ERF domain 402 462 IPR036955 GO:0003700|GO:0006355
Aed4g1609 658 Gene3D AP2/ERF domain 302 368 IPR036955 GO:0003700|GO:0006355
Aed4g1609 658 CDD AP2 302 365 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1609 Aed-Chr4 20832257 20836367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1609 14 486 AP2-EREBP Transcription Factor Family AT4G37750 52.720 1.17e-157 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aed4g1609 AP2 2.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1609 K09285 - gmx:100787223 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1609 4 20832257 20836367 Aed4g1609 4 20832257 20836367 ECH
Aed6g0415 6 3592570 3596201 Aed4g1609 4 20832257 20836367 PCT