Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1608 ATGAATTTGAAGATGGATTCCGACAGAGCGAAGCTGTTCGTTGGGGGCATTTCTCGCGATACCACCGAAGACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCTGACTCCACAATCTCCGTCGACCGCACCACCCGAAGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGACAGTGTAACTCACCGTCCGAGGGGGTTTGGGTTCATCACTTTCGATTCCGAGGAATCCGCTCAAAACGTTATGGTCAAGAATTTCCATGACCTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATAATGATGGGTTTAGTAAATTAAGAAATAAGAACGAAAGAGGAGTTCCTAAGAGTTTTGCTCCTTATACTAGGAGTATGGTTCCGGGTTTCGCCCCTTTGCCTTGGTATGGTGGTGATGGGGTATATGCATACGGGTCTAACGCTTATGATTGCTGGTACCCTGTGGGTGGGTATGGGGGGAATGGATATGCGCTTCCGTCTGATGCTCCTAGGAACATCTGGTATGGGCCAATGATAACTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCGAATGTTGCATATGTGGGGGGTAGGATTGGAGTTGTAAGTAACGGTGCTGGATCTTGGGGGTATAGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAAGCTTTTAATGCCAACGGATATGTTCCTGGCAATGTGACATCATCTCATGGTGTAATGCTGGATGTTGTTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATTTCTAGTTGA 888 0.4854 MNLKMDSDRAKLFVGGISRDTTEDVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTDSVTHRPRGFGFITFDSEESAQNVMVKNFHDLNGRQVEVKRAVPKEGNHGYNDGFSKLRNKNERGVPKSFAPYTRSMVPGFAPLPWYGGDGVYAYGSNAYDCWYPVGGYGGNGYALPSDAPRNIWYGPMITGPQACQVPYASAVPNVAYVGGRIGVVSNGAGSWGYSGILGSATNLKFDQAFNANGYVPGNVTSSHGVMLDVVDSSSLKGSNGEISS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1608 295 SMART rrm1_1 11 118 IPR000504 GO:0003723
Aed4g1608 295 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 78 - -
Aed4g1608 295 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 79 293 - -
Aed4g1608 295 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 79 293 - -
Aed4g1608 295 SUPERFAMILY RNA-binding domain, RBD 6 78 IPR035979 GO:0003676
Aed4g1608 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 122 IPR000504 GO:0003723
Aed4g1608 295 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 78 - -
Aed4g1608 295 Gene3D - 2 77 IPR012677 -
Aed4g1608 295 SUPERFAMILY RNA-binding domain, RBD 78 139 IPR035979 GO:0003676
Aed4g1608 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 77 IPR000504 GO:0003723
Aed4g1608 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 115 IPR000504 GO:0003723
Aed4g1608 295 Gene3D - 78 124 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1608 Aed-Chr4 20819740 20821121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1608 6 69 C2H2 Transcription Factor Family AT2G19380 36.364 5.32e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1608 K14411 - gmx:100786665 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1608 4 20819740 20821121 Aed4g1608 4 20819740 20821121 ECH