Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed4g1608 | ATGAATTTGAAGATGGATTCCGACAGAGCGAAGCTGTTCGTTGGGGGCATTTCTCGCGATACCACCGAAGACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCTGACTCCACAATCTCCGTCGACCGCACCACCCGAAGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGACAGTGTAACTCACCGTCCGAGGGGGTTTGGGTTCATCACTTTCGATTCCGAGGAATCCGCTCAAAACGTTATGGTCAAGAATTTCCATGACCTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATAATGATGGGTTTAGTAAATTAAGAAATAAGAACGAAAGAGGAGTTCCTAAGAGTTTTGCTCCTTATACTAGGAGTATGGTTCCGGGTTTCGCCCCTTTGCCTTGGTATGGTGGTGATGGGGTATATGCATACGGGTCTAACGCTTATGATTGCTGGTACCCTGTGGGTGGGTATGGGGGGAATGGATATGCGCTTCCGTCTGATGCTCCTAGGAACATCTGGTATGGGCCAATGATAACTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCGAATGTTGCATATGTGGGGGGTAGGATTGGAGTTGTAAGTAACGGTGCTGGATCTTGGGGGTATAGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAAGCTTTTAATGCCAACGGATATGTTCCTGGCAATGTGACATCATCTCATGGTGTAATGCTGGATGTTGTTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGAAATTTCTAGTTGA | 888 | 0.4854 | MNLKMDSDRAKLFVGGISRDTTEDVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTDSVTHRPRGFGFITFDSEESAQNVMVKNFHDLNGRQVEVKRAVPKEGNHGYNDGFSKLRNKNERGVPKSFAPYTRSMVPGFAPLPWYGGDGVYAYGSNAYDCWYPVGGYGGNGYALPSDAPRNIWYGPMITGPQACQVPYASAVPNVAYVGGRIGVVSNGAGSWGYSGILGSATNLKFDQAFNANGYVPGNVTSSHGVMLDVVDSSSLKGSNGEISS | 295 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed4g1608 | 295 | SMART | rrm1_1 | 11 | 118 | IPR000504 | GO:0003723 | |
Aed4g1608 | 295 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 5 | 78 | - | - | |
Aed4g1608 | 295 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 79 | 293 | - | - | |
Aed4g1608 | 295 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 79 | 293 | - | - | |
Aed4g1608 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 78 | IPR035979 | GO:0003676 | |
Aed4g1608 | 295 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 122 | IPR000504 | GO:0003723 | |
Aed4g1608 | 295 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 5 | 78 | - | - | |
Aed4g1608 | 295 | Gene3D | - | 2 | 77 | IPR012677 | - | |
Aed4g1608 | 295 | SUPERFAMILY | RNA-binding domain, RBD | 78 | 139 | IPR035979 | GO:0003676 | |
Aed4g1608 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 77 | IPR000504 | GO:0003723 | |
Aed4g1608 | 295 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 79 | 115 | IPR000504 | GO:0003723 | |
Aed4g1608 | 295 | Gene3D | - | 78 | 124 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed4g1608 | Aed-Chr4 | 20819740 | 20821121 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed4g1608 | 6 | 69 | C2H2 Transcription Factor Family | AT2G19380 | 36.364 | 5.32e-06 | 45.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed4g1608 | K14411 | - | gmx:100786665 | 399.053 |