Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1600 ATGCAAGAAGAGGTCGAGGTAGAAACCACCATGAAGGGCAAGATCAACGTTTTGGATCTGAAAACGTTAATTGAGGAGCTTGAGTCTTCATCAATCGAAGTCCCTTCGGTTTTCATCTGCCCAATTTCACTAGAGCCAATGCAAGACCCGGTGACCCTTTGCACGGGGCAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGTCACAACACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCGGTCACGCCAAACACCACACTCCACCACTTCATACTCTCTTGGTTCTCGCAGAAGTACTTGGTCATAAAGAAGAAGCTCGAGGACGTGCAAGGCACAGCCTTGGAGTTATTGGACACGCTCAAAAAGGTTAAGGGTCAAAATAGAGTTCGAGCCCTCAAACAACTTCGCCAACTCATTGATTCCCACGTCTTCACTAGGAAAACCGTTGAGGAAAACAATGGCCCTTTTTTGGTTTCTTCCTTGTTGGGTCCTTTCACTTCCCACGCTGTTGGCTCCGAAGTTATTGGAATTCTCGTGAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCACCCCGCCAAGGTGTCGTTGTTGGTGGACATCATGAACGATGGAACAATTCAGACAAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTCGAAGGTAACCCTTCCGAGACGGTTGTTTTATCAAGTTTGAGTCTTTTAGCTGGGGTGTTAAGATTAGTGAGAGATAAGAAACACCCAACTAGTGTTTTAAAAGGACTCATATTACTCAAAATTGTGTGTTCGCGCGAATCTGTCAGAAGCTCAATTATAAGCATAGGAGCGGTGCCTCAATTGATTCAGCTTTTACCCACTTTGAATAACGAGTGTTTGGAGATAGCACTTCATATTCTTGAGGTTTTGTCAACGCTTCCTGAGGGGAGATTGGCTTTGAAAGAGTGCCCAAATATTATTCCCAATGTGGTGAAGTTGTTGATGAGAGTGTCCGAAAGTTGCACGCAATTTGCATTGTCGATATTGTGGGCTATTTACAAGCTTGCCCCAGAAGAATGTGCTTCCAAAGCTGTGGAGGCAGGGTTGGCAGCGAAGCTACTTCTAGTGATTCAGAGTGGCTGCAACCCCGTGTTGAAGCAGAAATCTACTGAGTTCTTGAAAATGTGCAGTCTAGATTACTCTACTGGTATCTTGATTTCCAAGTGTATGCTTACTGCCACAATACAATGA 1260 0.4492 MQEEVEVETTMKGKINVLDLKTLIEELESSSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNTTLHHFILSWFSQKYLVIKKKLEDVQGTALELLDTLKKVKGQNRVRALKQLRQLIDSHVFTRKTVEENNGPFLVSSLLGPFTSHAVGSEVIGILVNLDLGSELKRNLMHPAKVSLLVDIMNDGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLAGVLRLVRDKKHPTSVLKGLILLKIVCSRESVRSSIISIGAVPQLIQLLPTLNNECLEIALHILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSTEFLKMCSLDYSTGILISKCMLTATIQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1600 419 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 418 - -
Aed4g1600 419 SUPERFAMILY RING/U-box 22 104 - -
Aed4g1600 419 Gene3D - 119 400 IPR011989 -
Aed4g1600 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 115 IPR013083 -
Aed4g1600 419 PANTHER WDSAM1 PROTEIN 11 418 IPR045185 GO:0061630
Aed4g1600 419 SUPERFAMILY ARM repeat 203 400 IPR016024 -
Aed4g1600 419 SMART Ubox_2 37 100 IPR003613 GO:0004842|GO:0016567
Aed4g1600 419 ProSiteProfiles U-box domain profile. 33 107 IPR003613 GO:0004842|GO:0016567
Aed4g1600 419 CDD RING-Ubox_PUB 38 80 IPR045210 -
Aed4g1600 419 Pfam U-box domain 34 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1600 Aed-Chr4 20750738 20751997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1600 18 419 U-box Gene Family AT3G49810 62.935 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1600 - - gmx:100808281 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1600 4 20750738 20751997 Aed4g1600 4 20750738 20751997 ECH