Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1596 ATGACACTGGGAGTTTTCCGAATTGGGATCTTATCGAGCTTCAAAGCAAAGTGTAACGCAAAGCCTGATTGCTTCGTTTCCGATCCAATTCTTCGTTCCTCCATGGAGGACGCATTTGCCAGATCTATCCCCGAGGTCCTTGATTTCTTTGGAGTGAACCCGACTAGGGGTTTATCTGATGCCGAGGTAGTACAACATGCTAGACTTTATGGAAAAAACGTGCTGCCCGAAGATCAAAGAGCTCCTTTTTGGAAAATGGTTTTGAAGCAATTTGAAGATTTGCTTGTAAAGATACTACTTGCAGCTGCTCTTATATCTTTTCTATTGGCATTAATTAATGGAGAAACAGGCTTGATGGCATTTCTGGAACCTTCTGTTATTCTGATGATATTGGCAGCAAATGCGACGGTTGGAGTGATTACAGAAACAAACGCTGAAAACGCTCTTGAGGAGCTACGTGCATATCAAGCTGATGTGGCAACTGTCTTGCGCAATGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGGGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCCGATATGAGGATGATTGAAATGCTAAGCAATCAAGTGCGGGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCTGTGGAGAAAGAGCTTAGAACAACCACAAAAACAAATGCTGTATACCAAGACAAAACAAATATTCTGTTCTCGGGTACGGTTATAGTTGCTGGTAGGGCAAGAGCTGTAGTGGTGGGAGTTGGTACTAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATGTTATAGCAGGGATTTGTGTCTTGGTGTGGATTGTGAATATTGGTCACTTTCACGACCCTTCTCATGGTGGTTTCTTGCGTGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCAGAAGGGCTCCCTGCAGTTGTTACGACGTGTTTGGCTCTTGGAACTAAGCGTATGGCTAGGTTGAATGCCATTGTTCGCTCCTTGCCATCGGTTGAGACCTTGGGCTGCACCACTGTTATTTGCAGCGACAAAACTGGTACTTTAACTACCAACATGATGTCAATATGTGTTGTTGAATCTGCAAAACGTGATCCTGTTGTTTCTGAATACTGTGTCAGTGGAACAACATATGCACCTGAAGGCATAATATTTGACAGTACAGGGTTGCAGCTTGACTTTCCTGCTCAATTGCCATGTCTTCTTCACATGGCAATGTGTTCTGCTCTTTGCAATGAATCAACCTTGCAGTATAATCATGATAAAGGGAATTATGAAAAGATTGGTGAGTCAACTGAAGTGGCACTACGTGTCTTGGCAGAAAAGGTTGGTCTACCTGGTTTCAATTCTATGCCATCAGCCTTGAATATGTTGACTAAGCATGAACGTGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGGTACACGTTTTGGATTTTTCTCGAGACCGGAAAATGATGAGTGTCCTCTGCAGCCGGAACCAGATGCATGTTTTGTTCTCAAAGGGTGCCCCAGAAAGTATAATATCTAGATGTACAACCATTCTGTGCAACGATGACGGTTCCACTGTGCCACTTACCGCTGATATTCGAGCAGAGCTGGACTCAAGGTTCCACAGGAAAAGAAACATTAAGATGCCTTGCTTTGGCCCTCAAATGGATGCCCTCAGCTCAACAGTCATTGTTGGGATGCTGGATCCTCCAAGAGATGAAGTAAGAAATGCAATGCTTTCATGTATGACTGCTGGCATACGTGTTATAGTTATCACTGGGGATAACAAGTCAACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCAATTGATAGATTTTTCTGAACATTCTTTCACTGCTTCTGAGTTTGAAGAACTTCCAGCACTGCAACAAACTATAGCATTGCAACGTATGGCACTTTTTACTAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCATTACAGCACCAGAATGAAGTGAGTGCTTCAGACATGGTGCTGGCTGATGACAACTTTGCCTCAATTGTTGCAGCTGTGGCAGAGGGAAGGGCAATATACAATAATACAAAACAGTTTATTCGATACATGATTTCTTCCAATATTGGCGAAGTAGTCTGTATATTTGTGGCTGCGGTGCTTGGAATACCGGATACTCTGGCCCCTGTCCAGTTGCTTTGGGTCAATTTGGTTACTGACGGATTGCCTGCCACTGCTATTGGCTTCAATAAACAAGATTCTGATGTGATGAGGGCTAAGCCTCGAAAGGTGAATGAAGCAGTTGTCACAGGTTGGCTCTTCTTTCGCTATTTGGTAATAGGAGCTTATGTTGGCCTTGCCACTGTTGCTGGTTTTATTTGGTGGTTTGTTTATTCTGATAGTGGCCCTAAACTTCCATACACAGAATTGATGAATTTTGATACTTGCTCGACCAGGGAGACAACTTATTCATGCAGTATATTTGATGATCGACATCCATCTACTGTATCAATGACTGTGCTTGTGGTAGTTGAGATGTTCAATGCTTTGAACAATCTCAGTGAAAATCAATCTCTTCTGAGAGAGAATGATGGAAGTGGGAATTGGAGGGCTAAGAGGGGGAAGGTCATTCCTCCCTGGAGTAACATGTGGCTTGTTGCTTCTATAATCCTAACTATGCTTCTTCACATACTAATCTTATATGTTCACCCACTATCAGTTCTTTTCTCTGTAACACCATTATCTTGGGCTGACTGGACAGTTGTTCTCTATCTTTCATTACCTGTTATACTCATTGATGAGGTGTTGAAGTTCTTCTCCAGAAATCCCATCGGTTTGAGATTCAGATTATGGTTCAGGAGGTCGGATTTACTTCCAAAAAATGAATTACATGACAAGTAA 2949 0.4273 MTLGVFRIGILSSFKAKCNAKPDCFVSDPILRSSMEDAFARSIPEVLDFFGVNPTRGLSDAEVVQHARLYGKNVLPEDQRAPFWKMVLKQFEDLLVKILLAAALISFLLALINGETGLMAFLEPSVILMILAANATVGVITETNAENALEELRAYQADVATVLRNGCFSILPATELVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESSSVEKELRTTTKTNAVYQDKTNILFSGTVIVAGRARAVVVGVGTNTAMGSIRDSMLRTEDVIAGICVLVWIVNIGHFHDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSICVVESAKRDPVVSEYCVSGTTYAPEGIIFDSTGLQLDFPAQLPCLLHMAMCSALCNESTLQYNHDKGNYEKIGESTEVALRVLAEKVGLPGFNSMPSALNMLTKHERASYCNHYWEEQFRKVHVLDFSRDRKMMSVLCSRNQMHVLFSKGAPESIISRCTTILCNDDGSTVPLTADIRAELDSRFHRKRNIKMPCFGPQMDALSSTVIVGMLDPPRDEVRNAMLSCMTAGIRVIVITGDNKSTAESLCRKIGAFDQLIDFSEHSFTASEFEELPALQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMRAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFDTCSTRETTYSCSIFDDRHPSTVSMTVLVVVEMFNALNNLSENQSLLRENDGSGNWRAKRGKVIPPWSNMWLVASIILTMLLHILILYVHPLSVLFSVTPLSWADWTVVLYLSLPVILIDEVLKFFSRNPIGLRFRLWFRRSDLLPKNELHDK 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1596 982 Pfam Cation transport ATPase (P-type) 428 537 - -
Aed4g1596 982 SUPERFAMILY HAD-like 359 760 IPR036412 -
Aed4g1596 982 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 126 381 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g1596 982 ProSitePatterns E1-E2 ATPases phosphorylation site. 363 369 IPR018303 -
Aed4g1596 982 SMART Cation_ATPase_N_a_2 37 111 IPR004014 -
Aed4g1596 982 Pfam Cation transporter/ATPase, N-terminus 42 106 IPR004014 -
Aed4g1596 982 Gene3D - 578 685 IPR023214 -
Aed4g1596 982 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 38 686 - -
Aed4g1596 982 Gene3D - 375 567 IPR023299 GO:0000166
Aed4g1596 982 Gene3D - 686 960 - -
Aed4g1596 982 Gene3D - 206 374 - -
Aed4g1596 982 Pfam Cation transporting ATPase, C-terminus 741 955 IPR006068 -
Aed4g1596 982 PANTHER SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 3 685 960 - -
Aed4g1596 982 SUPERFAMILY Calcium ATPase, transduction domain A 158 269 IPR008250 -
Aed4g1596 982 Pfam E1-E2 ATPase 156 340 - -
Aed4g1596 982 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 368 557 IPR023299 GO:0000166
Aed4g1596 982 PANTHER CALCIUM-TRANSPORTING ATPASE 685 960 - -
Aed4g1596 982 PANTHER CALCIUM-TRANSPORTING ATPASE 38 686 - -
Aed4g1596 982 Pfam haloacid dehalogenase-like hydrolase 584 701 - -
Aed4g1596 982 SUPERFAMILY Calcium ATPase, transmembrane domain M 36 957 IPR023298 -
Aed4g1596 982 Coils Coil 145 165 - -
Aed4g1596 982 PRINTS P-type cation-transporting ATPase superfamily signature 582 593 - -
Aed4g1596 982 PRINTS P-type cation-transporting ATPase superfamily signature 680 692 - -
Aed4g1596 982 PRINTS P-type cation-transporting ATPase superfamily signature 361 375 - -
Aed4g1596 982 PRINTS P-type cation-transporting ATPase superfamily signature 604 614 - -
Aed4g1596 982 PRINTS P-type cation-transporting ATPase superfamily signature 207 221 - -
Aed4g1596 982 Gene3D - 89 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1596 Aed-Chr4 20710536 20730807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1596 35 977 Primary Pumps ATPases(2) AT1G10130 75.644 0.0 1528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1596 K05853 - gmx:100783509 1648.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1596 4 20710536 20730807 Aed4g1596 4 20710536 20730807 ECH