Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1581 ATGGGACCTCTTGGTGTTGGAGAATGGGATTGCTTTGGCAAAATGTTGTCCAATGAAGCCCATCATTATCCTGGGGAAGGTGATGGGAATGTTGGATTGCAATCCATGTTTTACTCTTTTGATTCTCACAATTCTAATTTGCAGCATATTTTTCAAGAAAACAGTCACAATAGTGTCTTCATGGCGAATCTGGAGGAGGATCATACAAACTACCATTTTGGTTATGTTGATCATGTGCTAGCAAATAGTACATCCATGGGTTTTTGCATGTTGGATGAGAAAAACCCTGGCTCTTCTGTCCAATCTGACATTGTAATGAAAGAGAATGTCAACTTGAGTGGAGATGAGATAAGTCATAAATTATTAGAGGATTTTGATCACAGTCAAGTGGAACCACCTATTATTTTTCCTGCCAAACATTTGAAGCTCAAAAGGAATAATCTTGATGTGCCAGAACCAGAACTCAAAGATAAAATAAAGTCACATGGGAATGGTAACAAAAAACCTCGTGTTTCAAAAGATGTGCAACATTGCATGAAGAACCAGAAACTTGAGAAAAGTGAGAATCATGCAGAAGAGATTATTAATGCAGGTTCAGATCATGGACGTAGTTCTAGTAGTTACATTGAAGAGGATGATAATTCTTCTCAGGCAAACAGTGGAGGAGCTACTTCTGAACTCAACTTAAAAGGGAAAACAAAAGTTAGTAGGGGTTCAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATAAATGAGAGGCTAAGAATTCTGCAGAATCTTGTCCCCAATGGAACAAAGGTTGATATAAGCACTATGCTTGAAGAGGCAGTCCAATACGTGAAATTTTTGCAGCTCCAGATTAAGCTTTTAAGCTCTGATGATTTGTGGATGTACGCTCCGATAGCCTATAATGGACTTGACCTCGTACTCAATCTCAATCAGAAGAGTTCTCCACCTTTGTGA 978 0.3875 MGPLGVGEWDCFGKMLSNEAHHYPGEGDGNVGLQSMFYSFDSHNSNLQHIFQENSHNSVFMANLEEDHTNYHFGYVDHVLANSTSMGFCMLDEKNPGSSVQSDIVMKENVNLSGDEISHKLLEDFDHSQVEPPIIFPAKHLKLKRNNLDVPEPELKDKIKSHGNGNKKPRVSKDVQHCMKNQKLEKSENHAEEIINAGSDHGRSSSSYIEEDDNSSQANSGGATSELNLKGKTKVSRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDLVLNLNQKSSPPL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1581 325 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 35 323 - -
Aed4g1581 325 SMART finulus 245 294 IPR011598 GO:0046983
Aed4g1581 325 Pfam Helix-loop-helix DNA-binding domain 249 289 IPR011598 GO:0046983
Aed4g1581 325 MobiDBLite consensus disorder prediction 199 243 - -
Aed4g1581 325 Gene3D - 241 297 IPR036638 GO:0046983
Aed4g1581 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 304 IPR036638 GO:0046983
Aed4g1581 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Aed4g1581 325 MobiDBLite consensus disorder prediction 152 197 - -
Aed4g1581 325 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 323 - -
Aed4g1581 325 MobiDBLite consensus disorder prediction 152 250 - -
Aed4g1581 325 CDD bHLH_AtIND_like 240 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1581 Aed-Chr4 20613117 20614505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1581 166 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 57.558 1.36e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g1581 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1581 - - gmx:100779202 418.313