Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1575 ATGAGCTGCAATGGTTGCCGAGTCCTCCGGAAAAGGTGCAGCGAGAGGTGCACCCTGAGGTCCTCCCTCCGGTGGATTGATTCACCACAAGCCCAAGCCCATGCAACTCTCTTCCTCGCTAAGTTCTTCGGCCGTAGCGATCTCATGTTTTTCATCTCCTCCGTCCCCCTACACAAAACACCCGCGCTGTTTCAGTCTCTGCTGTTCGAAGCTTGCGGCCGGACCATTAATCCCGTTAACGGGGCCGTCGGACTGCTGTTGAGCGGTAACTGGCACGCCTGCCAGGCCGCTGTTGACACCGTGCTCGCCGGAGGCCTTCTCCGGCCGCCGAAGTTAGATGAATCGTCGTCAGACAGCATGGTCTCGGAGTCTTTGAAAAGAAGCAGCGATGCAACAGAGATGGCAAGCTATGATGGGAAAAAGCTTTTGAATCTCTTCGTCTAG 444 0.5586 MSCNGCRVLRKRCSERCTLRSSLRWIDSPQAQAHATLFLAKFFGRSDLMFFISSVPLHKTPALFQSLLFEACGRTINPVNGAVGLLLSGNWHACQAAVDTVLAGGLLRPPKLDESSSDSMVSESLKRSSDATEMASYDGKKLLNLFV 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1575 147 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Aed4g1575 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 134 - -
Aed4g1575 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 134 - -
Aed4g1575 147 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1575 Aed-Chr4 20574517 20575413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1575 1 137 AS2 family AT3G49940 56.579 4.71e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed4g1575 LOB 7.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1575 - - gmx:100800624 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1575 4 20574517 20575413 Aed4g1575 4 20574517 20575413 ECH