LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g1562	ATCCGTATAAATAGGTGCATTGAGTTTGCACACGTAGCAGCAAGCAGCAAGCCACCGCTCACTGGAAATTGTAATCAAGGATTATTGGATCAATCAGCGATGAGTGCTCCGTCTCGAGAAGAGGAATCGAAGGATGAGGAAGCGAACAGGCTTCTAGTTCTAGAAGAAGCAACAGTATTGGAGAAAGAAGAAGAAGAAGAAGAGGTGGCATACGAAGCAGGGGAGAAGATCCTGGTGTCGGAATTCGAGTTTGAGACGGTGGACGATGGGAGCGTGCCACCTTTCTCGTGGAAGAAGCTGTGGCTGTTCACTGGGCCTGGGTTCTTGATGAGCATAGCGTTTTTGGATCCGGGGAATCTGGAGGGGGATCTCCAGGCTGGGGCAATCGCGGGCTACTCGCTCCTCTGGCTCCTCATGTGGGCCACCTTCATGGGCCTCTTGATCCAGCTTCTCTCCGCCAGGGTCGGTGTCGCCACGGGCCGCCACCTCGCCGAGCTCTGCAGGGACGAGTATCCCAATTGGGCTCGCCTCATCCTCTGGTTCATGGCCGAGCTCGCACTCATTGGCGCCGACATTCAAGAGGTTATTGGAAGTGCCATCGCCATCCAAATTCTCACCCGAGGCTTCTTCCCTCTCTGGGCTGGAGTTCTAATTACTGCTTCCGATTGCTTTTTCTTTCTATTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATCGCTGTTATGGGTGTTTCTTTTGCCTGGATGTTTGCTGATGCAAAACCTAATTCAAATGAGCTTTTAATGGGTATTTTGGTTCCAAGACTGAGCTCAAGAACAATTCGGCAGGCTGTGGGCGTTGTGGGTTGTGTCATTATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTGCAGTCAAGGAAGGTTGATCCTAAAAAGATAGGTCGGGTACAGGAGGCTCTCAACTACTATTCAATTGAGTCATCGGCTGCACTTTCAGTCTCCTTCATGATCAATCTTTTTGTCACAACAGTTTTTGCTAAGGGTTTTTATGGAACAAAGCAGGCAAATAGTATAGGATTGGTCAATGCAGGACAATATCTTGAAGAAAAGTATGGAGGAGGAGTCTTCCCTATTCTTTATATATGGGGAATTGGGTTATTGGCAGCTGGGCAGAGTAGCACCATCACTGGCACATATGCTGGCCAATTTATAATGGGGGGTTTCCTCAACCTTCGTTTAAAGAAATGGTTGAGAGCCCTGATCACTCGAAGTTTTGCAATTGTGCCAACTATAATTGTAGCTATTGTTTTTAATAGATCAGAAGCCTCATTGGATATTTTGAATGAATGGCTCAATGTGCTTCAGTCTATGCAAATTCCCTTTGCTCTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCATATCATGGGAACATTTAGGATTGGGCCTGTTCTTGAGAGAGTAGCATGGACTGTTGCTGGACTGATAATAGTAATTAATGGGTATCTCTTGTTAGATTTCTTCGTTTCTGAGGTGAATGGCATCTTGCTTGGTGTTCTAGCCTGCACCTGCACAACAGCCTATATTGCATTCATTGTATATTTGGTTTCACATAGCGATGTTCTTCCTTCTGCTTGGGTTAATCGTCTTCCCAAAGGATTTTCTTCTACTGGGAATTAA	1680	0.4655	IRINRCIEFAHVAASSKPPLTGNCNQGLLDQSAMSAPSREEESKDEEANRLLVLEEATVLEKEEEEEEVAYEAGEKILVSEFEFETVDDGSVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLILWFMAELALIGADIQEVIGSAIAIQILTRGFFPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIAVMGVSFAWMFADAKPNSNELLMGILVPRLSSRTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPKKIGRVQEALNYYSIESSAALSVSFMINLFVTTVFAKGFYGTKQANSIGLVNAGQYLEEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTIIVAIVFNRSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEHIMGTFRIGPVLERVAWTVAGLIIVINGYLLLDFFVSEVNGILLGVLACTCTTAYIAFIVYLVSHSDVLPSAWVNRLPKGFSSTGN	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g1562	559	Hamap	Divalent metal cation transporter MntH [mntH].	86	508	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	Pfam	Natural resistance-associated macrophage protein	121	482	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	MobiDBLite	consensus disorder prediction	23	47	-	-
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	452	471	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	209	228	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	390	409	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	234	255	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	283	306	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	179	205	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PRINTS	Natural resistance-associated macrophage protein signature	418	435	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	49	548	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Aed4g1562	559	PANTHER	BNAC08G04640D PROTEIN	49	548	-	-
	Aed4g1562	559	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	98	476	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g1562	Aed-Chr4	20499799	20503558	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g1562	40	540	Inorganic Solute Cotransporters	AT1G47240	79.010	0.0	813

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g1562	K21398		-	gmx:100791117	938.332

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g1562	4	20499799	20503558	Aed4g1562	4	20499799	20503558	ECH