Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1561 ATGGCTCTGTTACGCGGCCCAGCCATGCGCACCACACATCCTACTATTACTATACCATCTCAGCGGTGGCAACATGCTTGGATAATGCCTCCTCTCACCATTTGGATTTTTTCAATCACACTCCGCTATGGTTATTACGGCCATTCGCGCATCCTGCTTGGCCCTGCCTCGTCCCGTTTGATGAAGGCAAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAACAAGGACAACAATCAAGTTATTCTTCATGCCTTCAATGAGAAGCCCGAGTTAATAAGCTCCCAAACTAATTGGACACTGTCCAATTTCTTCCTTGTTGAAGCCTTTAAAAGCAAGGGAATTTCTTTGTGGTTAAATCATGGCTCCACCGTCCGTTTGAGGTGGGAAGCACACGCTAATAGTAGTTTGGATCAGCTACATGGGATGGTGATCAAAGGAGAAAAGATGTTTGAACTACTTCACGCTAAACAAACGAGCTTCCCCAATGCAATTGCTCTTCACGAGACTGTTAATGGTAAAGAAGCTGAATACAAGGTTGAGCAAGATAATATATACCACATTGGGATTCTAAACATGGATGCCAGGAACATAATCTTGAATATGAAAGTTAATGTTTCGGCAAATGTATATGATACCACCAAAGCCAAGAAGATGTGCTCTACTGCAAAAGGATCTTGTAGCCTCAGTTTTGTCTTCCCTAATACTCATTATGTTATTCTTACGGCAACTAGCAATGGAGATGTGGGATCCTATGTTGAAATTTCTTTTCTGGCTCGTGTGTTGACCTACATGTTACTTTTAGGAGCTCTTATGATTGTTGTTTATCTGATAATGAAGTTCCTTGGAATCTATGATGGTGCTGATCAGCATAGTCATGTGACGGTGGACGTCACATACAGAACAAGTAACGTAGTTGCAACGCAAACCGAAACTGAGCCATTGATGAGAGTGGAGACAAATCAATTGACATATGGAACAAATGCAAAACATGATGATGAAGAAGAGGAAGAAGAAGATTCAGGAGCATGCAGTAGCACTTCAGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATTGTCGATGGGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTATTCCATAATTAG 1230 0.4163 MALLRGPAMRTTHPTITIPSQRWQHAWIMPPLTIWIFSITLRYGYYGHSRILLGPASSRLMKASSVFVKQLQVSNKDNNQVILHAFNEKPELISSQTNWTLSNFFLVEAFKSKGISLWLNHGSTVRLRWEAHANSSLDQLHGMVIKGEKMFELLHAKQTSFPNAIALHETVNGKEAEYKVEQDNIYHIGILNMDARNIILNMKVNVSANVYDTTKAKKMCSTAKGSCSLSFVFPNTHYVILTATSNGDVGSYVEISFLARVLTYMLLLGALMIVVYLIMKFLGIYDGADQHSHVTVDVTYRTSNVVATQTETEPLMRVETNQLTYGTNAKHDDEEEEEEDSGACSSTSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDGESKVCPICRRLIHKVRRLFHN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1561 409 Pfam Zinc finger, C3HC4 type (RING finger) 354 403 - -
Aed4g1561 409 SMART ring_2 357 396 IPR001841 -
Aed4g1561 409 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 408 - -
Aed4g1561 409 PANTHER OS05G0521000 PROTEIN 21 408 IPR044586 GO:0004842
Aed4g1561 409 ProSiteProfiles Zinc finger RING-type profile. 357 397 IPR001841 -
Aed4g1561 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 408 IPR013083 -
Aed4g1561 409 Pfam Domain of unknown function (DUF4792) 82 151 IPR032008 -
Aed4g1561 409 MobiDBLite consensus disorder prediction 326 347 - -
Aed4g1561 409 SUPERFAMILY RING/U-box 348 403 - -
Aed4g1561 409 Pfam Domain of unknown function (DUF4793) 176 277 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1561 Aed-Chr4 20489631 20491755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1561 340 407 C3H Transcription Factor Family AT1G62370 35.294 2.11e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1561 - - gmx:100794488 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1561 4 20489631 20491755 Aed4g1561 4 20489631 20491755 ECH