Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1560 ATGGGGAGAGTGAAGCTTCTGATCAAAAAGATTGAGAACACAACCAATAGGCAAATCACTTTCTCAAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATATTGATGTGGCTCTCATCATGTTTTCCCCGACTGGAAGAGCCACTTTCTTCCCTGGCAACAAAAGCATTGAAGAAATTCTAGAACGATATGTTAATCTTACGGAGGGTGAACGTGGAAGGATGCATAATCAAAAGCACATTCAAAAGTTGCTTAGTAAGTTGAAAGATGAAGCTGGTCAAACATGTCAAGCCCCTAGGATATTTGAAGGTGATCCTTGTGAGATCACGACAGTGAGTGAGGCTGAATATAGTGAATATGTCCTAGGGGAAACTCTGAAACAAGTGCAACTACGGAAGTGTGTTTTGGAGAAGTACAATATTTCTCATGCTCCACAGGTGCATGCTTCAAAAATTGTAGATGTAAATGGATTTGTTACTGGAGCCTCAAAGAACCCGGTAGATTGGTTTCCACAGGCTCAGAGTCTGAACTTTGGGAATGTTTATGACCCTGCTTCTGTCAGAGTCAGAGATCAACAATCACATGGTGAGGTTGTTGATATGTTAGCACCAACTTCAACCCATGTGCATTCCCCAAACATGGATCAGAATAGTTTAGCGGCTGGCTTTACTAATAATACATTACATCCCCAGTTTGGACAAGCTTTTCACACCAATTCGCCCTCTTGGAACCATCTTCATCTTTTAGGGAGTAGAACTTCATCGATTGCAGAGATGATAACTCAGATAAGGGAAGGGCAACGCTTGAACAGTTTTTTTCTCAATTCACCACCACCTCGTCAAACACCTTAA 870 0.4161 MGRVKLLIKKIENTTNRQITFSKRRNGLIKKAYELSVLCDIDVALIMFSPTGRATFFPGNKSIEEILERYVNLTEGERGRMHNQKHIQKLLSKLKDEAGQTCQAPRIFEGDPCEITTVSEAEYSEYVLGETLKQVQLRKCVLEKYNISHAPQVHASKIVDVNGFVTGASKNPVDWFPQAQSLNFGNVYDPASVRVRDQQSHGEVVDMLAPTSTHVHSPNMDQNSLAAGFTNNTLHPQFGQAFHTNSPSWNHLHLLGSRTSSIAEMITQIREGQRLNSFFLNSPPPRQTP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1560 289 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Aed4g1560 289 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Aed4g1560 289 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed4g1560 289 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Aed4g1560 289 PANTHER MADS BOX PROTEIN 1 91 - -
Aed4g1560 289 PANTHER MADS BOX PROTEIN 93 251 - -
Aed4g1560 289 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed4g1560 289 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 91 - -
Aed4g1560 289 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 93 251 - -
Aed4g1560 289 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aed4g1560 289 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed4g1560 289 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed4g1560 289 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1560 Aed-Chr4 20481886 20484463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1560 1 148 Type I MADS-box Gene Family AT1G77980 40.314 3.07e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed4g1560 SRF-TF 7.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1560 - - gmx:100776548 389.808