Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1559 ATGAAGATGGAGACTCGTGCTGCCTCAAAGAGAAAGGCAAATGCAGTGGTGTATGTCCAAAAACAACACCCCAAAAGGCAGCGCGTGGTGTTGGGTGAACTTCCCAATTTACCAAATATCCTGACACAAAATATAAAACTCCAATGTCAGAAGAATCCCAATACTAAGAAACCTTCTCCTACAAACAATAGCCCTTCTTATTCCCCCAATATTGATGAATCTTATGTTTCCGACATCTATGAGTATCTTCACGAAATGGAGATGCAGAGAAAGAGAAGACCAATGATTGATTACATAGAAAAACTTCAGAAAGAAGTTACAACAACTATGAGGACAATATTAGTGGATTGGTTAGTAGAGGTAGCTGAGGAGTACAAGCTTCTCTCAGATACCCTTCATCTATCTGTTTCATATGTTGATAGGTTTTTGTCTATTAATCCTGTTAGTAAATCAAGACTTCAGTTGCTGGGTGTTTCATCCATGCTCATTGCTGCAAAGTATGAGGAAATTGACCCACCCCGTGTTGATGCGTTCTGCAACATCACTGATAACACATACCAGAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCGAGTCCCTAAAGTTTGAACTGGGAAATCCTACAGTAAACACCTTTCTAAGGAGGTTTGCTGATATTGCTTCTGAAAACCAAAAAACTCCAAATTTGCAGATTGATTTTTTGGTTGGCTACCTTGGTGAGCTAAGTTTGTTGGACTATGATTGTTTAAGATTCTTACCTTCTGTTGTGGCTGCATCAGCTATATTTCTTGCCAGATTTATTGTCTGGCCTGAAGTGCATCCTTGGACTTCTTCCTTGTCTGAATGTTCGGGTTACAAACCAGCTGAGTTAAAAGAATGTGTTCTAATCTTGCATGACTTGTATTTGTCAAGAAAGGCAGTGTCCTATAAAGCTGTCCGGGATAAATACAAGCAGCACAAGTTCAAATATGTGACAAACTTGCCTTCCCCTCCACATGTACCTAGTTGTTACTTTGAAGACCAGTGA 1032 0.3992 MKMETRAASKRKANAVVYVQKQHPKRQRVVLGELPNLPNILTQNIKLQCQKNPNTKKPSPTNNSPSYSPNIDESYVSDIYEYLHEMEMQRKRRPMIDYIEKLQKEVTTTMRTILVDWLVEVAEEYKLLSDTLHLSVSYVDRFLSINPVSKSRLQLLGVSSMLIAAKYEEIDPPRVDAFCNITDNTYQKAEVVKMEADILESLKFELGNPTVNTFLRRFADIASENQKTPNLQIDFLVGYLGELSLLDYDCLRFLPSVVAASAIFLARFIVWPEVHPWTSSLSECSGYKPAELKECVLILHDLYLSRKAVSYKAVRDKYKQHKFKYVTNLPSPPHVPSCYFEDQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1559 343 Pfam Cyclin, N-terminal domain 78 206 IPR006671 -
Aed4g1559 343 Pfam Cyclin, C-terminal domain 209 331 IPR004367 -
Aed4g1559 343 ProSitePatterns Cyclins signature. 111 142 IPR006671 -
Aed4g1559 343 SMART cyclin_7 116 200 IPR013763 -
Aed4g1559 343 SMART cyclin_7 213 301 IPR013763 -
Aed4g1559 343 Gene3D - 78 328 - -
Aed4g1559 343 SUPERFAMILY Cyclin-like 209 333 IPR036915 -
Aed4g1559 343 MobiDBLite consensus disorder prediction 50 72 - -
Aed4g1559 343 Gene3D - 92 207 - -
Aed4g1559 343 PANTHER CYCLIN-A3-1-RELATED 59 342 - -
Aed4g1559 343 SUPERFAMILY Cyclin-like 73 206 IPR036915 -
Aed4g1559 343 SMART Cyclin_C_2 209 332 IPR004367 -
Aed4g1559 343 PIRSF Cyclin_A_B_D_E 1 337 IPR039361 -
Aed4g1559 343 CDD CYCLIN 110 199 IPR013763 -
Aed4g1559 343 CDD CYCLIN 209 300 IPR013763 -
Aed4g1559 343 PANTHER CYCLINS 59 342 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1559 Aed-Chr4 20478501 20480216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1559 5 342 Core Cell Cycle Gene Families AT5G43080 58.017 2.06e-137 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1559 K06627 - gmx:100787417 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0364 6 3133043 3137309 Aed4g1559 4 20478501 20480216 PCT