Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1551 ATGGATGACGATTTTTCATTTCTACAACCTCTAGATCTCATCACAAAAAACCCCAGTGAACTACACAATATAGTAAAAGCCAAAAAGGAAAACCTACGTCAGCATAAATTTGAATCGAATAAAATAGTTAATGACTTGAGTCAGGGTGATGCAAGGAGGGAACGCGTTCAGGAAACAGAGAAAGAGAGGAAAGAAAAAGAAAATGAACACAGACTGGAAAAAATAAACTTAGAGAAAGAGAAGGAGCAACCAAAGCGTGAGTATAATAAAGAAACACAACACACCGATCAAAACCATACAGAGAAACATGAAGATAAGACTACTGTCGAAAATCTAGAAAATAGAGCTCATGGAGGGCCTGAGCCAATGGAGATCTCACAGAGCCCCATGTCATCACCTGATGATACTCCATGTGATGATGTAAAAGTTTTGAAAGGCCATACATCCGAGGTTTTTGCTTGTGCATGGAATCCATCCGCCCCACTTCTTGCATCTGGGTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGATGATGGACCTTGTGACTCTAGTGTGCAAAATGAACCACTAAATGTGGTGGTGCTGCAGCACTTCAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACAACACTCGACTGGAATGGAGATGGAACACTGTTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGCAGAGATGGGGAGTTGAATTGTACACTAAACAAGCACAGAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTATGGAATATAAAAACTGGGGAATGGAAACAACTATTTGAATTTCACACTGGCCCGACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCCACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGAGAGACTAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCTATTAAATGGGATCCATCAGGTTCTTTACTGGCTTCCTGCTCTGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACCAACCATCCCAATCAACAGTTAGTGCTAGCAAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGGGAGTACCTGGCCAGTGGCTCCATGGATAGATACATGCATATATGGTCTGTCAAGGAGGGCAAGATTGTAAAAACATACACTGGAAAGGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTCCGAATGTAA 1416 0.4089 MDDDFSFLQPLDLITKNPSELHNIVKAKKENLRQHKFESNKIVNDLSQGDARRERVQETEKERKEKENEHRLEKINLEKEKEQPKREYNKETQHTDQNHTEKHEDKTTVENLENRAHGGPEPMEISQSPMSSPDDTPCDDVKVLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIDDGPCDSSVQNEPLNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNCTLNKHRGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTGEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGETRPIKTFSGHQDEVNAIKWDPSGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNHPNQQLVLARDPVYSVAFSPNGEYLASGSMDRYMHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Aed4g1551 471 CDD WD40 141 464 - -
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 432 - -
Aed4g1551 471 PANTHER WD40 REPEAT PROTEIN 399 471 IPR045183 GO:0003714|GO:0016575
Aed4g1551 471 PANTHER WD40 REPEAT PROTEIN 1 398 IPR045183 GO:0003714|GO:0016575
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Aed4g1551 471 MobiDBLite consensus disorder prediction 47 112 - -
Aed4g1551 471 Gene3D - 133 471 IPR015943 GO:0005515
Aed4g1551 471 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 1 398 - -
Aed4g1551 471 ProSitePatterns Trp-Asp (WD) repeats signature. 263 277 IPR019775 -
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 361 - -
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 368 IPR001680 GO:0005515
Aed4g1551 471 Coils Coil 49 83 - -
Aed4g1551 471 MobiDBLite consensus disorder prediction 30 137 - -
Aed4g1551 471 SMART WD40_4 192 235 IPR001680 GO:0005515
Aed4g1551 471 SMART WD40_4 430 468 IPR001680 GO:0005515
Aed4g1551 471 SMART WD40_4 237 276 IPR001680 GO:0005515
Aed4g1551 471 SMART WD40_4 320 359 IPR001680 GO:0005515
Aed4g1551 471 SMART WD40_4 137 176 IPR001680 GO:0005515
Aed4g1551 471 SMART WD40_4 279 317 IPR001680 GO:0005515
Aed4g1551 471 SMART WD40_4 388 427 IPR001680 GO:0005515
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 281 - -
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 180 - -
Aed4g1551 471 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 399 471 - -
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Aed4g1551 471 SUPERFAMILY WD40 repeat-like 139 469 IPR036322 GO:0005515
Aed4g1551 471 Pfam WD domain, G-beta repeat 141 176 IPR001680 GO:0005515
Aed4g1551 471 Pfam WD domain, G-beta repeat 207 235 IPR001680 GO:0005515
Aed4g1551 471 Pfam WD domain, G-beta repeat 401 427 IPR001680 GO:0005515
Aed4g1551 471 Pfam WD domain, G-beta repeat 242 276 IPR001680 GO:0005515
Aed4g1551 471 Pfam WD domain, G-beta repeat 322 359 IPR001680 GO:0005515
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 235 IPR001680 GO:0005515
Aed4g1551 471 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Aed4g1551 471 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Aed4g1551 471 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Aed4g1551 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1551 Aed-Chr4 20448633 20454601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1551 208 438 Eukaryotic Initiation Factors Gene Family AT2G46290 23.482 5.82e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1551 K04508 - gmx:100783690 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1551 4 20448633 20454601 Aed4g1551 4 20448633 20454601 ECH