Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1542 ATGGAGTCTTCTGGTAAACGACCCCAACCCCCACCTGGATTTCCCCCACTTGATGAATATAAAAAATTGAAGTTATCTAGTGTTGTTGAATCCACCAACCCATTTGCACCATCTGATGTTCTGGATCGTGTCACGAAAGATGATGTAGCCCAAAAAATGCAACTACTGAGTCCTAATTACATTGCAAAATTGGAAGAGGGTTATCATCCAACTAGAAGCGGTACAGGAATTTATATTGATGTTCAAGAAGAGGAAGAAGATGGGGTTGATACTAAACATGATGATCTAGAGCATATTTGGAAGGAGATGGGCATGGCAATGGAATGTTCTAAAGTTAAACGGAGCACAAAAACTTACGCATATGATTCATGGAGGAATACCAAAGGAAAAACAGATGAAGATAATGACCTAATAGTAAACAAAATCTCAGTTCATCCAAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGCTTCAATTTTCTTGCTAGAAATCTTGCAGGTGACAATCCAAGTGGCTGCATCATAGCCCATGCTCCAGGATCAGCTGGGAAAACAATATTCATGATAATCAGTTTCATGCAAAGCTTCATGGGAAAGTACCCTAATGCAAAACCCTTAGTGGTGCTTTCTGAGAGAACATTGCCAACATGGAAGGAGGAGTTTCAAACATGGCAAGTGGAGGATATACCTTTGTATGACTTTTACAATGCGAAGAGCAGAAGTGAGAAGCAACAAGTGTTGAAGCAATGGATGGAGCATAAGAGTGTCCTTTTCTTAGCATACAAAGAGTTCTCCTCTATTGTCGGTGATAATGATCAAACCAGTAGAAGTGTTGCATCTTTGTCTTGCCGAGAGATTCTAATCAATATCCCTTCGATTCTGGTGATGTTAGACGACGGTTTACAAAATCCTGAAAGTAATCAAAACAAAGATATGGTACAGTCTCTAGCGAAGGTTCAAACGTCGAGAAAAGTTGTGATCTCTGGAACGTCAACCCTTTATCAGAATCACATCAGGGAGGTGCTCGATGTTTTGAATCTCGTTCGGCCGAAGTTTTTGAAGACGGAGGCATCAAGGCAGATCATGAGGCACATTCAGAGCAGAGTTCACACGCAACGAGTAAGAAGCTTCTATGATTTAGTTGAGAACACTCTGAAGAAGGACACAATGGATTTTAGAACGAAAGTCGCTGTTATACGAGATTTGCACGAGATGACGAACGAGTTTCTTCACTGTTACAAAGGAGATGATGATAAACTACCCGATCTTGTTGATTTCAGTGTGGTACTCACTCTCAGCCCTAGACAGAAACTCGAAGTTGAGAAATTGAAAAAGCTTGGATTTGGAAGAAACTTTATCAAGACAAATTCCATAGGCAGTGCTGTGTATATTCATCCTAAACTGAAACCATTGGTGGAAATTGGCGGTGAGAATTGCGTATCTGACAACACAATGGATGATTTTATAGAGAAAAATCTAGACATGAGAGATGGTGTGAAGGCGAAATTCTATTACAACATGCTGAACCTGTGTAGATCAGCAAATGAGAAGCTTCTGGTTTTGAGTAAGCATCATTTGACTCTGAAATATCTAGAGAGATTGACTGTGAAACTGAAAGGCTGGAGTATCGGAAGAGAACTTTTCTCAGTCTCGGGAGAGTCGAGCTTGGAGAAACGACAATGGTCCGTGGAAAGATTCAACAATTCTCCAGACGCAAAGGTTTTCTTTTGCTCGATTGATGCTGCGTGGGGAGAGGGCGGGTCTCTGGTCGGGGCATCGCGTGTGATTATTCTCGATACGTCGGTTACACGACAGGCTATGGATCGTGCATTTGGACCGGACCATACGAGGAAGGCGTTTGTGTATCGTTTGGTGGCTGCCGATTCACCGGAGGAGGAGGATCTTGTTAGTTGTTTCAAGAAGGAAGCGATTTCAAAGATGTGGTTTGAGTGGAACGAGAAACATGGTGGTTATGGAGCTTCTTTTGAAGAAGCTGAGACTGTTACCGCGGAAGAGTGTGGTGATCACTTTCTTGTAAGTCCGGTAGAATGTGTGGCTTTCAATCGGCATTGGCAAGCAATAGTTTTTTCCTCTTATGTTTAA 2109 0.4196 MESSGKRPQPPPGFPPLDEYKKLKLSSVVESTNPFAPSDVLDRVTKDDVAQKMQLLSPNYIAKLEEGYHPTRSGTGIYIDVQEEEEDGVDTKHDDLEHIWKEMGMAMECSKVKRSTKTYAYDSWRNTKGKTDEDNDLIVNKISVHPRHMKQMKPHQVEGFNFLARNLAGDNPSGCIIAHAPGSAGKTIFMIISFMQSFMGKYPNAKPLVVLSERTLPTWKEEFQTWQVEDIPLYDFYNAKSRSEKQQVLKQWMEHKSVLFLAYKEFSSIVGDNDQTSRSVASLSCREILINIPSILVMLDDGLQNPESNQNKDMVQSLAKVQTSRKVVISGTSTLYQNHIREVLDVLNLVRPKFLKTEASRQIMRHIQSRVHTQRVRSFYDLVENTLKKDTMDFRTKVAVIRDLHEMTNEFLHCYKGDDDKLPDLVDFSVVLTLSPRQKLEVEKLKKLGFGRNFIKTNSIGSAVYIHPKLKPLVEIGGENCVSDNTMDDFIEKNLDMRDGVKAKFYYNMLNLCRSANEKLLVLSKHHLTLKYLERLTVKLKGWSIGRELFSVSGESSLEKRQWSVERFNNSPDAKVFFCSIDAAWGEGGSLVGASRVIILDTSVTRQAMDRAFGPDHTRKAFVYRLVAADSPEEEDLVSCFKKEAISKMWFEWNEKHGGYGASFEEAETVTAEECGDHFLVSPVECVAFNRHWQAIVFSSYV 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1542 702 Pfam SNF2-related domain 171 390 IPR000330 GO:0005524|GO:0140658
Aed4g1542 702 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 110 684 IPR044567 GO:0080188
Aed4g1542 702 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 69 112 IPR044567 GO:0080188
Aed4g1542 702 Gene3D - 423 681 IPR027417 -
Aed4g1542 702 PANTHER PROTEIN CHROMATIN REMODELING 35 69 112 - -
Aed4g1542 702 PANTHER PROTEIN CHROMATIN REMODELING 35 110 684 - -
Aed4g1542 702 CDD SF2_C_SNF 508 627 - -
Aed4g1542 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 652 IPR027417 -
Aed4g1542 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 355 IPR027417 -
Aed4g1542 702 Gene3D - 120 393 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1542 Aed-Chr4 20379862 20384434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1542 516 655 RAD5 or RAD16-like Gene Family AT1G11100 31.250 8.96e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1542 K10875 - gmx:100780454 746.117