Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1541 ATGGCCTCTTCTTCCTCCGTTATCAAGGATACCAAAGTGCTTATGGTTGGCGCTGGCGGGATTGGCTGCGAGCTTCTCAAGACCCTCGCTCTCTCCGGTTTCCCTGACATTCACATCGTTAGTTCTCTTCTCTATTTTGGGGGGAGGAGTGTTGGTGCTTACAGTCTGTTGGCTTCAATTGCTTTTGTGCTAATCGAAGCCTGTGATGATGGAAGTAGGGTGTTGATTGACATGGACACCATAGAAGTCAGTAACCTGAACAGACAATTTTTATTTCGACAATCCCATGTTGGGCAATCCAAGGCTAAAGTTGCTAGGGATGCTGTTTTAAAATTTAGGCCCCACATAAACATTACACCATACCATGCAAATGTCAAAGATCCTGATTTCAATGTGGACTTCTTTAAGCAATTTAACGTTGTTCTAAATGGACTTGACAATCTAGATGCACGCCGGCATGTGAATCGCTTGTGCTTGGCAGCTAATGTTCCTTTGGTTGAAAGTGGAACTACTGGGTTCCTTGGACAGGTAACTGTACATGTCAAGGGAAGAACAGAGTGCTATGAGTGTCAGCCTAAACCAGCCCCCAAGACATATCCTGTCTGTACTATTACAAGTACCCCATCGAAGTTTGTTCATTGTATTGTCTGGGCCAAGGACCTACTTTTTGCTAAGTTATTAGGGAATAAGAATCAGGAAAATGATTTAAATGTGCGATCAAGTGATGCTGCCAGCTCATCTGAAAATGTAGAGGATGTATTTGTTCGTAAGAAAGACGAAGACATTGATCAATATGGAAGGAAAATTTTTGATCATGTATTTGGGTATAACATTGAATTAGCTTTGTCTAATGAAGAGACATGGAAAAACCGTAACAGACCAAAGCCTACATACAGCAAGGATGTCCTGTTTGATGAACCGGCTCAACAAAATGGAAATTTGGAGAATAAATATGCATCTGATGATGAATTGTCAGTTTCTGCCATGGCGTCTTTGGGCATGAAGAACCCACAGGATATTTGGAGTCTCAAAGAAAATTCTAGAATATTTCTTGAAGCATTTAGACTATTTTTTACAAAAAGGGAAAAGCAGGAGATTGGCAATCTAAGCTTTGATAAAGATGATCAGTTGGCTGTAGAATTTGTTACTGCAGCTGCAAACATAAGGGCTGCTTCATTTGGCATCCCTCTCCACAGCCTTTTTGAAGCTAAAGGTATTGCTGGTAATATTGTGCATGCTGTTGCGACTACAAATGCTGTGATTGCTGGGTTGATCGTCATTGAAGCAATCAAAGTGCTGCAAAATGACATTAAAAGTTATAGAATGACATATTGTCTGGAGCATCCAGCAAGAAACATGCTGCTTATGCCCGTGGAGCCATTTGAACCTAACAAATCTTGTTATGTTTGTTCTGAGACACCTTTATCTCTTGAAATAAACACCAATCATTCAAAGTTAAAAGACTTGGTCGAAAAAATTGTCAAGGCAAAGCTTGGGATGAATCTACCTCTTATTATGTGTGCTTCAAATCTCCTTTATGAAGCTGGTGATGTTGAGGATGACATGATTGCTATCTATGAGGCCAACCTTGAAAAGGTTCTGGCTGAGCTTCCTTCCCCAGTAACTGGTGGCACAATGCTTACGGTAGAGGATATGCTGCAGGAATTCGTTTGCAATATTAACATCAAGCACAGAGAGGAGTTTGATGAAGAGAAAGAACCTGATGGGATGGTTCTTTCCGGATGGACTCAACCAGTATCAGCAGTAGAAAACAAAGACAAATCTGTTGGAAATGGTGCAAGCACCTCAGATGCATTAATAACAGCTGTGGAATCTGAAAAGGATGAGGAGATAACTATAGTTTCAGCCTTCAAGAAACGAAAACTTCCTGACGAATCTGATATTTCAAATAGTGCAGCTGAAGCAAAGAATAAGAAGCAATTGGAAGTAATTGATGATGAAGAGGATCTTGTCGTGCTTAATGAGGATTTAGACAGCGTTAAAAAGAGAAGAGTGTCATAG 2022 0.406 MASSSSVIKDTKVLMVGAGGIGCELLKTLALSGFPDIHIVSSLLYFGGRSVGAYSLLASIAFVLIEACDDGSRVLIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPHINITPYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAANVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLLGNKNQENDLNVRSSDAASSSENVEDVFVRKKDEDIDQYGRKIFDHVFGYNIELALSNEETWKNRNRPKPTYSKDVLFDEPAQQNGNLENKYASDDELSVSAMASLGMKNPQDIWSLKENSRIFLEAFRLFFTKREKQEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLQNDIKSYRMTYCLEHPARNMLLMPVEPFEPNKSCYVCSETPLSLEINTNHSKLKDLVEKIVKAKLGMNLPLIMCASNLLYEAGDVEDDMIAIYEANLEKVLAELPSPVTGGTMLTVEDMLQEFVCNINIKHREEFDEEKEPDGMVLSGWTQPVSAVENKDKSVGNGASTSDALITAVESEKDEEITIVSAFKKRKLPDESDISNSAAEAKNKKQLEVIDDEEDLVVLNEDLDSVKKRRVS 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1541 673 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 477 568 IPR028077 -
Aed4g1541 673 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 5 40 - -
Aed4g1541 673 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 197 409 IPR023318 -
Aed4g1541 673 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 75 590 - -
Aed4g1541 673 CDD Uba2_SUMO 12 470 - -
Aed4g1541 673 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 75 590 IPR045886 -
Aed4g1541 673 Gene3D - 471 661 - -
Aed4g1541 673 Pfam ThiF family 8 468 IPR000594 -
Aed4g1541 673 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 8 517 IPR035985 GO:0008641
Aed4g1541 673 Gene3D - 2 142 IPR042449 -
Aed4g1541 673 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 5 40 IPR045886 -
Aed4g1541 673 Pfam Ubiquitin-activating enzyme, SCCH domain 358 404 IPR019572 -
Aed4g1541 673 PIRSF SUMO_E1B 69 656 IPR030661 GO:0016925|GO:0019948
Aed4g1541 673 PIRSF SUMO_E1B 2 41 IPR030661 GO:0016925|GO:0019948
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1541 Aed-Chr4 20364960 20371772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1541 369 463 EF-hand Containing Proteins AT2G30110 35.000 5.37e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1541 K10685 - gmx:100779926 1158.28