Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1494 ATGAACATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACTCCCCACCATCAACACCAACACCAACCCATTTCAGCAGAACAACACCATAACAATTCAAACCTCCCTTTGCCTCCACCAGCAACAGCCTCTTTAAGCGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAACGATGTTCATCATGTTCAGGTTCAGGACTGTTCTAACAACAACAACAACAACATCAACTATTGGAATCTGAAGATGTGTGGTGGTGCCACTGCCACTGAAGTGAATTCCACAAGAAAAGTTGTCATCATGAACAACATGGAGGATAATAATAATGATGGGAACAACAACAACAAGCACGTGATGATGGAGAGTGAAGAAAGTGGCTGTGGCGAGTTCAGGGTGTGCCAGGATTGTGGCAATAGGGCCAAGAGGGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAAGGACGTGGCTTTGATTGCACCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTCATCGACGCGGCGAAAGTGGTGGTGACGGCAACGACGATGGTGGTAGTAGTGCTTCTAAGAGGCTGAGAACTTTGGGTGGGTCATCATCAAAGAATAATGTTGCTGCTGCTGCTACCTCTCATAGTTCCACTTCTATTGCTACCCCAACTAAGAGCTTTGATACCAGCTCTTGTCAACAAGATGCTGGTTTCAAGCAGTCTTTGCCACGGCACGTGCGAGCACCTGCTGTTTTTAGGTGCCACAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGCATACATGGCAACGGTTCATATCAGTGGCCATGTCTTCAAAGGGTTTCTCTATGATCATGGTGGTGATGATCATGCCAGAAATGATGTGTCTGGTGTCTCAGAACTGCAACTGGGAAACAATATTGGAAGTGGAAAGAATAATAGTAACAATAGGGAATGCTCTTCTGCAATTGGGGTTCCTACTAGTGCTTACCCTGCTTCTGTTTGCTGA 1020 0.4716 MNMLGLRDLVLIAPTPHHQHQHQPISAEQHHNNSNLPLPPPATASLSVGLGIFPLLTVPHTNDVHHVQVQDCSNNNNNNINYWNLKMCGGATATEVNSTRKVVIMNNMEDNNNDGNNNNKHVMMESEESGCGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCTTHVKSTWVPASHRRGESGGDGNDDGGSSASKRLRTLGGSSSKNNVAAAATSHSSTSIATPTKSFDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIAYMATVHISGHVFKGFLYDHGGDDHARNDVSGVSELQLGNNIGSGKNNSNNRECSSAIGVPTSAYPASVC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1494 339 Pfam Domain of unknown function (DUF702) 136 292 - -
Aed4g1494 339 MobiDBLite consensus disorder prediction 19 37 - -
Aed4g1494 339 MobiDBLite consensus disorder prediction 16 37 - -
Aed4g1494 339 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 339 IPR007818 GO:0003700|GO:0006355
Aed4g1494 339 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 136 178 IPR006510 -
Aed4g1494 339 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 244 290 IPR006511 -
Aed4g1494 339 MobiDBLite consensus disorder prediction 193 228 - -
Aed4g1494 339 MobiDBLite consensus disorder prediction 175 228 - -
Aed4g1494 339 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1494 Aed-Chr4 19765722 19767040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1494 1 330 C2H2 Transcription Factor Family AT5G12330 37.870 6.23e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aed4g1494 DUF702 4.8e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1494 - - gmx:100777812 456.062