Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1472 ATGGGTGCAGAATCCAACAGCATGGAAGATGCCAAGCCTGAGAATGGAAGCGACCTAGTCGAGTCTCGCTTCGTCGAGTTCTGCAAGAATGGGCTTGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATTAATCTGTTTAGAGAAACCAAGCATATTCTACTGTCAAACTTTTCGTCAATGGGGAATGGAACGTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAGAAATTGATCCAGAAAAATGAGGAGGGTGGAAAGGAAGACACTGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTTAACATTGGAGATTTTTTTAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACATTAAGTAATATACATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGATGCATGCCAATGCTATTTACTTGAAGATTCTTAGCAATGTAACATGCCTACATGACATGATATCTTGTATGTTTGATGGTGCTAGGTACTACAAACGTGTATTTGGAGAGTTCTTTGTGGCAACCGACACAAATGCTGAAAATAATTCATCTGTTGCTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGTTTTCGGAATTTCAACATTCATGATTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATATTCAACACTTCTGAAGAGGAATTGAGGAAAATAATGGAGAATGCCAATAATGTAATAGCGGATATATTGAAGAAGCAGCCTTCCTTGGGGTCTGAATGTGAAACCGAAAACCTTGAGAACATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCATCTTTGCCTTCTAGTTTAAATATGTTAGAAAAAGATTATGATTACATGATTCGCAATAAGAGTGAATTGGATGAGAGGTTATTCATTAACGAGGATGACAGCCTATTAGCTTCAGTAAGCTTGTCTGGAGGTTCTGTTTCAGCTGGTGGTGTAAAGAGGAAATATGATTCAATGGCATCGCCTGCTAAGACCATTACAAGTCCACTGTCACCTCACCGCTCCCCCATATCACATGCTAATGGCATCCCAGGTAGTGCAAATTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAGGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGGGATGTTACAAGTGATGTGGTGCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGTGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTTATGGACAATATATGGGCCGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTCACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTAGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCAGTTGCCAGACCTTCTCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGACTGCCACCAGTGCCTACCTTGCCCAAGCTTGAAATTTCACCAATTTCAGCTCAAAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAAGAAATTCTTTCACTTCACCGGTGAAAGATCGGCTCCTTCCCTTCAACAACCTTAAGTCAAAACTACCCCCGCCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATTTCACAACTGAACCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCACGCCGAAATGGGAGAACAGGACAGGATCATGTTGACATCATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAACCACTGCTGGTTGAACTTGGCCCTGCTGGACCAACTACAAAAAGTGATCGAATACCTGAAGTCAATAACAAAAATGACGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCATCTTTCCCAACGCTTCCTGATATGTCTCCAAAAAAAGTGTCAGCCGCACACAACGTATATGTCTCTCCACTACGATCATCCAAGGTACTGTACAACCGAAAGGTGAGAGGTCCTCTCAATTTTGATGATGTTGATGTGGGTTTGGTCAGTGACTCCATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGCTGTGCATCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCATGA 2808 0.4202 MGAESNSMEDAKPENGSDLVESRFVEFCKNGLALEEKSCKEAINLFRETKHILLSNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNEEGGKEDTENTGLSLCRILRAAKLNIGDFFKELPQFVVKAGPTLSNIHGTDWENRLEAKEMHANAIYLKILSNVTCLHDMISCMFDGARYYKRVFGEFFVATDTNAENNSSVAVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKSNKGVDLLASLCNIFNTSEEELRKIMENANNVIADILKKQPSLGSECETENLENIDKDGLTYFKDLMEESSLPSSLNMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGSVSAGGVKRKYDSMASPAKTITSPLSPHRSPISHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPSRPSPELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLEISPISAQNGDIRSPKRNVLMERNSFTSPVKDRLLPFNNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQDHVDIITFYNEIFIPSVKPLLVELGPAGPTTKSDRIPEVNNKNDGHLAQCPGSPKISSFPTLPDMSPKKVSAAHNVYVSPLRSSKVLYNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1472 935 Gene3D - 206 364 - -
Aed4g1472 935 Pfam Retinoblastoma-associated protein A domain 427 628 IPR002720 GO:0005634|GO:0051726
Aed4g1472 935 Gene3D - 750 839 - -
Aed4g1472 935 Coils Coil 283 303 - -
Aed4g1472 935 SMART DUF3452_2 81 245 IPR024599 -
Aed4g1472 935 SUPERFAMILY Cyclin-like 754 828 IPR036915 -
Aed4g1472 935 PANTHER BNACNNG22930D PROTEIN 20 758 - -
Aed4g1472 935 PANTHER BNACNNG22930D PROTEIN 754 884 - -
Aed4g1472 935 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 758 IPR028309 GO:0006357|GO:0051726
Aed4g1472 935 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 754 884 IPR028309 GO:0006357|GO:0051726
Aed4g1472 935 Gene3D - 430 618 - -
Aed4g1472 935 Pfam Retinoblastoma-associated protein B domain 753 816 IPR002719 GO:0005634|GO:0051726
Aed4g1472 935 SUPERFAMILY Cyclin-like 435 630 IPR036915 -
Aed4g1472 935 Pfam Domain of unknown function (DUF3452) 94 245 IPR024599 -
Aed4g1472 935 SMART RB_A_2 427 628 IPR002720 GO:0005634|GO:0051726
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1472 8 935 Core Cell Cycle Gene Families AT3G12280 59.674 0.0 1162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Aed4g1472 RB_A 6.9e-65 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1472 K04681 - gmx:100777805 1619.75