Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1451 AGTGTGGCCTTTGGATCTGAAAATGGGTTTCATCGATTTCATCGTTTTGATGATTGGGTCAGTCTTTTTGTTCAAAGCTCTCGATTTTCCTTTCTGGGTCTCCTTCTTCTGCTTCGTTTGATTCCCCCAATTCTTCAGTCTTCAATTTCAAACCCTAATTTTGCTGCCATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGATCGCACTTATGAAATAACCCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTCAGCAGGGTTCCTGACTACGGCCATGGCCATGGCCATGCTGAGGCTGGTGCTGATGACCGTGCCATTACAAAAAGAAGGAAAGCTGTTGGTGATGATGGTAACGACAGTGATGAAGAGGCTAAGAGGAGCAAGATGCTTGAGTTGGGCCACACTGGCAGTACTCCTACTGGTAGGGGAAGAGGCCGAGGTAGAGGAAGAGGCCGTGGCCGAGGGCGACCACCTTTAAATAGAGAGGCATATCATCAGGATGCTGAATCCGAGCCTTGCACTTCTGTTCAGCCGAGCAACCAACAAGATACAACAAACACAAGTGTTGCAATGGACATTGGTTCTTCTGAGTCTAAGGAGGTACCAAAGGAGGAGGAGAATATTGCAGCTCCTGTTGTTCCTGTCGTAAGCACCGACTCCGATTCACTCCGGAACATCGATCTGAATGCCAGTACAAATGAAAACAACGATGACAAAAAGGCAGGCATTGCAGCAGCTGCTGCTGCTGCTGCTGATGCCTCAGTGCCTGAACCTGACCCCGATGCCTCGTTGCCTGAACCTCCAACGGAGAGCAAGCCCAAGCAGCCTCCAACAGAGAGCAAGCACGAAGAAATTCCAGGGTGGTCACTTTCTGATGTGGACAAGATGGCCATTGATTCGCTGCAGCTTGCACAGCTTGGTAGGCCACTAGAAGAGGAGGAGGAAGACTATGATGAAGAAGAAGAGGAGGGGTAA 1143 0.4759 SVAFGSENGFHRFHRFDDWVSLFVQSSRFSFLGLLLLLRLIPPILQSSISNPNFAAMRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAITKRRKAVGDDGNDSDEEAKRSKMLELGHTGSTPTGRGRGRGRGRGRGRGRPPLNREAYHQDAESEPCTSVQPSNQQDTTNTSVAMDIGSSESKEVPKEEENIAAPVVPVVSTDSDSLRNIDLNASTNENNDDKKAGIAAAAAAAADASVPEPDPDASLPEPPTESKPKQPPTESKHEEIPGWSLSDVDKMAIDSLQLAQLGRPLEEEEEDYDEEEEEG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1451 380 MobiDBLite consensus disorder prediction 316 330 - -
Aed4g1451 380 MobiDBLite consensus disorder prediction 226 250 - -
Aed4g1451 380 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 64 127 IPR003958 -
Aed4g1451 380 MobiDBLite consensus disorder prediction 274 294 - -
Aed4g1451 380 MobiDBLite consensus disorder prediction 167 186 - -
Aed4g1451 380 SUPERFAMILY Histone-fold 60 152 IPR009072 GO:0046982
Aed4g1451 380 Gene3D Histone, subunit A 53 142 IPR009072 GO:0046982
Aed4g1451 380 PANTHER HISTONE SUPERFAMILY PROTEIN 57 376 - -
Aed4g1451 380 Coils Coil 359 380 - -
Aed4g1451 380 MobiDBLite consensus disorder prediction 331 345 - -
Aed4g1451 380 MobiDBLite consensus disorder prediction 167 380 - -
Aed4g1451 380 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 57 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1451 Aed-Chr4 19057830 19063445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1451 57 366 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.284 1.67e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed4g1451 CBFD_NFYB_HMF 3.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1451 K21752 - gmx:100801593 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1451 4 19057830 19063445 Aed4g1451 4 19057830 19063445 ECH