Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1405 ATGGGATATGAAAGCAGAAAACTCTCAGATGAGTATGAAGTCTCAGAAGTGTTGGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAGAAAATCAAGCAGTGACTCCAAAACTCATATTGTAGCCATCAAAACCCTGAGAAGGTTAGGCACTACTGCCTCAAACTCCAACAATAACCCTTCTATGATGATGGGGTTCCCCTCATGGAGGCAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAAAGTTTCACCACACCCAAATGTGATTGATCTCTATGATGTGTATGAGGACTCAAATGGGGTGCACCTTGTGTTGGAGCTGGACTTGAAGCCTGAGAATTGCCTATTCTTGGATGTGAGGAGGGACTCACCTCTTAAGATAATGGACTTTGGGTTGAGTTCTGTTGAGGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTCTCACCAGAGGCTCTTTCTCAAGGCAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGTGATTCTATATATCTTGCTCTCTGGGTATCCGCCTTTCATTGCGCAAAATAATCGCCAGAAACAACAAATGATAATGAATGGCATTACCCATTCAGCAAGGCAACTAATTTCAGATCTTCTGACTGTTGATCCTAGTAGAAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTTGGTGACAAAGCCAAAGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGTTTCAATGCAAGGCGCAAACTGCGTGCGGCTGCAATTGCTAGTGTTTGCACCACTATCTTCCTCAGAACCAAAAGGCTGAAATCCTTGGTGGGAAAACATGATCTCACAGAAGAGGAAATTGAAAATCTCAGGATAAGTTTTAAGAAAATATGTGTGAAAGGAGACAATGCCACTCTATCTGAGTTTGAGGAGGTGCTGAAAGCAATGAAAATGCCATCACTGATCCCTCTAGCACCACGTATATTTGACTTGTTTGACAACAACCGAGATGGAACAGTTGACATGAGAGAGATACTATGTGGTGATATCACTGAGCCTGGCAAATTGGATGAGATATTTGACCTAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCTCAGAGATAGCTCTCTCCAAGATGTAGTTCTCTCTTCTCTTCGCCCACATTAG 1245 0.4281 MGYESRKLSDEYEVSEVLGRGGFSVVRKGTRKSSSDSKTHIVAIKTLRRLGTTASNSNNNPSMMMGFPSWRQVSVSDALLTNEILVMRRIVEKVSPHPNVIDLYDVYEDSNGVHLVLELDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIMNGITHSARQLISDLLTVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVCTTIFLRTKRLKSLVGKHDLTEEEIENLRISFKKICVKGDNATLSEFEEVLKAMKMPSLIPLAPRIFDLFDNNRDGTVDMREILCGDITEPGKLDEIFDLMDANSDGKVTFDEFKAAMLRDSSLQDVVLSSLRPH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1405 414 ProSiteProfiles Protein kinase domain profile. 12 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1405 414 SMART efh_1 372 400 IPR002048 GO:0005509
Aed4g1405 414 SMART efh_1 341 369 IPR002048 GO:0005509
Aed4g1405 414 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 119 - -
Aed4g1405 414 PANTHER SERINE/THREONINE-PROTEIN KINASE 120 399 - -
Aed4g1405 414 Gene3D - 281 364 - -
Aed4g1405 414 SUPERFAMILY EF-hand 289 401 IPR011992 -
Aed4g1405 414 Gene3D Phosphorylase Kinase; domain 1 2 114 - -
Aed4g1405 414 SUPERFAMILY Protein kinase-like (PK-like) 7 256 IPR011009 -
Aed4g1405 414 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Aed4g1405 414 Pfam Protein kinase domain 120 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1405 414 Pfam EF-hand domain pair 345 397 IPR002048 GO:0005509
Aed4g1405 414 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Aed4g1405 414 SMART serkin_6 12 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1405 414 Gene3D Transferase(Phosphotransferase) domain 1 115 276 - -
Aed4g1405 414 ProSitePatterns Protein kinases ATP-binding region signature. 18 45 IPR017441 GO:0005524
Aed4g1405 414 Gene3D - 365 399 - -
Aed4g1405 414 CDD EFh 344 397 IPR002048 GO:0005509
Aed4g1405 414 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 11 119 - -
Aed4g1405 414 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 120 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1405 Aed-Chr4 18388211 18393676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1405 3 407 EF-hand Containing Proteins AT5G23580 27.966 1.44e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Aed4g1405 Pkinase 2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1405 K13412 - gmx:732616 677.937