Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1383 ATGTTTCTCCCTATCCAACAATTCTTGGAAAACGGTGCATCATACATGCAAATGTACTTTCCTCACTCAATCATTCCCAATGAGTTGATTCACTCAATAATGCCCGATTTGTCAACCTATGCAAGAGTTGTGGTTCAAAATCCTCCTTCTGGCTTTCATTATCAAAGTCTCAACTTTCGTTTGTTCACTTTGATTTTAGATGTTTCTGTTCAAAGGTTATACGATGAAAGCGACGACGATGACATGATCACCAACATGAACATGATGGAGTCCACGAGACAGGTCAAAATGGTTCCTACATCAAGCACCGCGATTGAGTCTCTTGAGAAAGTGAAACTAGAAGATGGTGCTGAGATGGAAAAGTGTAGTATTTGTCTAAGTGAATTTGATGAAGACATGGAAGTGTCACTAATGCCATGTAAGCATGTGTATCATCAAGAATGCATCACCAAGTGGTTTAAAGTAAGCTATATGTGCCCTATGTTTCGCTACCCAATGCCCCCTGTAGGGGATGATTATTGA 522 0.4004 MFLPIQQFLENGASYMQMYFPHSIIPNELIHSIMPDLSTYARVVVQNPPSGFHYQSLNFRLFTLILDVSVQRLYDESDDDDMITNMNMMESTRQVKMVPTSSTAIESLEKVKLEDGAEMEKCSICLSEFDEDMEVSLMPCKHVYHQECITKWFKVSYMCPMFRYPMPPVGDDY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1383 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 169 IPR013083 -
Aed4g1383 173 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Aed4g1383 173 SUPERFAMILY RING/U-box 106 166 - -
Aed4g1383 173 Pfam Ring finger domain 121 161 IPR001841 -
Aed4g1383 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 168 - -
Aed4g1383 173 SMART ring_2 122 162 IPR001841 -
Aed4g1383 173 PANTHER F6A14.12 PROTEIN-RELATED 76 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1383 Aed-Chr4 17946521 17947042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1383 92 172 C3H Transcription Factor Family AT1G26800 40.741 1.26e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1383 - - aprc:113870408 206.068