Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1330 ATGTATGTGAAGCAAGTGAGAGAATGGCAATGTGCTCGATTGAGAGGGAAAAGAGCTCCACTGTCACCACCTCAACCTTCTAAGAAAGTGAACTTGCATCATCAGAGTGTCCAAAAGGCAAAATTTGTGAAGCAAGAAGTAGATGAAGATGAAGGCATTTTTAACAGTACTGAATGCCCAAAAGTGGAGGACTTAACTTCTCCCTCTTTCAGGCTTGTCATGAAGCCATCCTTTATCAGTAGAGATTACTTGGAAATACCACCAGAATTTGTAGAACAGTATTTGAAGAGGACACAAGCAGTTGTGCTCCTTGAGGGGTTGGATGGGAGAAGTTGGCCTGCTTTTTGTTCTGCTCCTAGAATTACTGAAGGATGGAACAAATTTGCATCAGGAAACAATTTGAATGTCGGGGATGTTTGTGTTTTTGAGCTGATCCATAAGATGCAGTGCCTTGCTTTCAAAGTTTCCATCTCAAGTTGCAGAGGAACCAAGTTGCCCCATTTCAAAAGGTAA 513 0.4191 MYVKQVREWQCARLRGKRAPLSPPQPSKKVNLHHQSVQKAKFVKQEVDEDEGIFNSTECPKVEDLTSPSFRLVMKPSFISRDYLEIPPEFVEQYLKRTQAVVLLEGLDGRSWPAFCSAPRITEGWNKFASGNNLNVGDVCVFELIHKMQCLAFKVSISSCRGTKLPHFKR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1330 170 SUPERFAMILY DNA-binding pseudobarrel domain 66 157 IPR015300 -
Aed4g1330 170 SMART B3_2 70 161 IPR003340 GO:0003677
Aed4g1330 170 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 40 160 IPR044837 -
Aed4g1330 170 Gene3D - 54 161 IPR015300 -
Aed4g1330 170 CDD B3_DNA 68 157 IPR003340 GO:0003677
Aed4g1330 170 Pfam B3 DNA binding domain 73 157 IPR003340 GO:0003677
Aed4g1330 170 ProSiteProfiles B3 DNA-binding domain profile. 69 161 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1330 Aed-Chr4 16342963 16345286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1330 66 156 REM Transcription Factor Family AT1G49480 34.000 1.09e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed4g1330 B3 2.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1330 - - gmx:100815331 172.94