Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1259 ATGAGTGAGGGAAATAGGAGTTGTAATTCATCATGTCTAGTGTGTAGGAATCAACGACGACGTCATGATGATAATAATTATGAATTTGGACAATACTTTGCGAGTAATAGGTCAAGAGACTTTGAGAGTGCTTGTAGGCTCTTTAGATTTGCAAACTTTATTAGACTAATTCGCTCTGTGGAACCATCTGAAAGGCAAGTTGCTACAAATTCCATTTTATTAGAGGCTAGCATTTGGGATCATTACCATGCTTATGGTGCCTTTGGTCATGCCTTCAATTTGGCTTCCCAAATTCAATCAATTGAAAGGAAATTAGAAACTGTAAACAATTCTCTTGCTAATATTCGAGTTCAACAAAGACAATTAGCAAGTTCACCTTCCCCTCACATCCCACAACAAAGTATCCAAGTTATCTCTACCAGGTCTATTGTCAAAGGAGAATCAAGTATTGTTGCGCCTAAGGAGAATGATATTATTGTTAAAGAGAGAGATTCGAAGGTTGATGACAAGGAGGAAAATGTTATTCCTAACAAAAATACCAATGTCAAAATCTAG 555 0.3658 MSEGNRSCNSSCLVCRNQRRRHDDNNYEFGQYFASNRSRDFESACRLFRFANFIRLIRSVEPSERQVATNSILLEASIWDHYHAYGAFGHAFNLASQIQSIERKLETVNNSLANIRVQQRQLASSPSPHIPQQSIQVISTRSIVKGESSIVAPKENDIIVKERDSKVDDKEENVIPNKNTNVKI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1259 184 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Aed4g1259 184 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Aed4g1259 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25-LIKE 9 158 - -
Aed4g1259 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 158 - -
Aed4g1259 184 Coils Coil 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1259 Aed-Chr4 13252599 13253607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1259 9 114 AS2 family AT3G50510 29.245 2.74e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed4g1259 LOB 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1259 - K06664 gmx:102660641 206.838