Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1254 ATGGACTTTAGCTTGGAATTTTCTGACTTTTTATTTGCACCAATTGAAGCTTGGACTACTCAAAGCGAGGAGGTGCAAGGATTAATGGTAGATGATGCTCATATCTCTATGGATTCAATGGATTCGGGGCATAACAACTTGGAGAACATTGGTGAAACTTCACTTGATGAAGATGAAATTTATGATGTATCACATTTAATTGCAGATGATTATGTCTTTGATTTCACAACATTAGGGATAGGCATAGGCGACATCCACAACGCGACTAACATTGATGGAGTTCCAAGAGTGGAACATGCAAATCAAGGCACTTTTCAAAATCTTGAAAGGGTCACAATTCATGAAGAAAATGGGGAGAAATATTCAGACTCTTCGTGTTGCATTTGTTTGGACGAATTTTTAATTGGCTCAAAAACAATTTGTTTGCCCCATCCTTGCTCTCATATCTTTCATGAACATTGTATTATAAGGTGGCTCAACACAAATAACACATGTCCTCTGTGTCGTATGTATGTTTATTGA 522 0.3716 MDFSLEFSDFLFAPIEAWTTQSEEVQGLMVDDAHISMDSMDSGHNNLENIGETSLDEDEIYDVSHLIADDYVFDFTTLGIGIGDIHNATNIDGVPRVEHANQGTFQNLERVTIHEENGEKYSDSSCCICLDEFLIGSKTICLPHPCSHIFHEHCIIRWLNTNNTCPLCRMYVY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1254 173 CDD RING-H2_PA-TM-RING 126 169 - -
Aed4g1254 173 ProSiteProfiles Zinc finger RING-type profile. 126 169 IPR001841 -
Aed4g1254 173 SUPERFAMILY RING/U-box 113 172 - -
Aed4g1254 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 172 IPR013083 -
Aed4g1254 173 SMART ring_2 126 168 IPR001841 -
Aed4g1254 173 Pfam Ring finger domain 125 169 IPR001841 -
Aed4g1254 173 PANTHER SI:CH211-59O9.10 49 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1254 Aed-Chr4 13173621 13174142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1254 14 169 C3H Transcription Factor Family AT5G20910 30.380 4.29e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1254 - K22378 pvu:PHAVU_007G098000g 92.4337