Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1253 ATGGCTGATTCTGATGCCAATCACAATGACCCATCTCTCGCTACCAATGCTGATGCACTCAATGATGTCGCAGAAGAAGAGGTCAAGTTGAGGTCTAGGGACCAAAGACTGGCTTTTGCAGGTGAGCCCAAGTGTATTATATGTGGCTGCTACGGTGAATACATATGTGATGAAACCGATGATGATGTTTGCAGTATGGAGTGCAAACAAGCACTGCTTTGCAGGATTTCCAAATCGTTGGCTCCACCACCCGAAACAATTCCTGCAGCTGATGTGTGTTTTTATGTTAAAGATGCTGATTCCGTATCGGGAACTGCATCAATGGCTAGTGGTCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCAGTTTTGTCATTCTCTGCCTGTAACCTCCCCAACAAGCTTTTCCACAATATTGAAGCAGCAGGATATGAAATGCCTACACCTGTCCAGATGCAAGCAATTCCTGCTGCTTTGACAGGCAAAAGCATGCTTGTTTTGGCCGATACAGGATCTGGGAAATCTGCTTCTTTTCTTATTCCGATAATTTCCCACTGTGTGATTCATCGTCGACAATATGTTTCTGATAAGAAGAAGCCTTTAGCTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCCAAGTTGCTTGGAAAGGGGTTGCCTTTCAAAACTGCTCTTGTGGTTGGTGGTGATGCCATGGCTGGACAACTCCATCGCATTCAACAGGGCGTGGAATTGATTGTAGGAACCCCAGGAAGGTTGGTTGATCTTTTAACGAAGCATGAGATTGAATTAGATGATGTGATGACTTTCGTTGTGGATGAGGTGGACTGTATGATGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATACGGCTCTGTCACAACCTCAGGTTTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGATGATTAACACTTTAGCAAAAGGTACGGTGGTTATCTCTGTTGGAGAACCTAATAGACCAAATAAGGCTGTGAAGCAAAAGCAGAAGCTGTTTGAAATTTTGGCAAGTGAGAAGCATTTTAACCCACCTGTTGTAGTGTATGTGGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTTGCCGCAGGAATTAAAGCAGTTTCAATTCATGGAGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTACTAGGTGTAAGGCAGGTAATTGTATTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAGGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAATTAGTTGATGTTTTGAAATCTAGTGGAGCAGCTGTGCCACAGGAGCTTGCCAATTCCTGGTATGCCTTGGGAGTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACACGATGA 1560 0.4391 MADSDANHNDPSLATNADALNDVAEEEVKLRSRDQRLAFAGEPKCIICGCYGEYICDETDDDVCSMECKQALLCRISKSLAPPPETIPAADVCFYVKDADSVSGTASMASGLRKKLDIHVKGDVVAPVLSFSACNLPNKLFHNIEAAGYEMPTPVQMQAIPAALTGKSMLVLADTGSGKSASFLIPIISHCVIHRRQYVSDKKKPLAMVLTPTRELCIQVEEHAKLLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLTKHEIELDDVMTFVVDEVDCMMQRGFRDQVMQIYTALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNRPNKAVKQKQKLFEILASEKHFNPPVVVYVGSRLGADLLANAITVAAGIKAVSIHGEKSMKERREIMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQGIVFVNEENKNVFAELVDVLKSSGAAVPQELANSWYALGVFSGGKGSKKRKHTR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1253 519 Gene3D - 341 501 IPR027417 -
Aed4g1253 519 Gene3D - 98 340 IPR027417 -
Aed4g1253 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 500 IPR001650 -
Aed4g1253 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 498 IPR027417 -
Aed4g1253 519 SMART helicmild6 379 461 IPR001650 -
Aed4g1253 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 336 IPR014001 -
Aed4g1253 519 SMART ultradead3 148 351 IPR014001 -
Aed4g1253 519 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Aed4g1253 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 338 IPR027417 -
Aed4g1253 519 Pfam Helicase conserved C-terminal domain 353 461 IPR001650 -
Aed4g1253 519 Pfam DEAD/DEAH box helicase 153 324 IPR011545 GO:0003676|GO:0005524
Aed4g1253 519 CDD SF2_C_DEAD 348 470 - -
Aed4g1253 519 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 501 - -
Aed4g1253 519 Gene3D - 24 81 - -
Aed4g1253 519 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 25 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1253 Aed-Chr4 13116510 13119609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1253 130 481 Eukaryotic Initiation Factors Gene Family AT1G72730 32.258 8.63e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1253 K19466 - gmx:100781473 892.878