Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1240 ATGGCCTCCATTGCACAAACAAGCGTGTGTTCCAACGAGGTCTTTGAGAAGCGTAGCATGATGGAGATGATAAGCGAACCCGTGACGGAATGGGAGAAGCTAAAGCTACTGGGTGAGGGCACCTACGGAACCGTCTCGCTAGCTGTTCTCACTGCGCCAGAAGAAGCCAAAGGTTCGCTGATAGCCGTCAAGACTTCGAAGCCCAACTGCTTGGAATCGTTGAAGAAAGAAGGAACCATACTTGATTCCTTCTTCGGCTGCAAAGAAATCCTTCAATGCATCTGGAGTTTATTCACTATGGACAACAACGGCCGCTTTGTCTACAATCTCATTATGGAGTTCGCTCCCTACGGTTCCCTCGGTAACTTTATCAGAAAACAACCACTCATGGAAAGCCACGTCATCGTCTACACGCGCCTGCTCCTCGTAGGGCTCACCCTCGTCCATCAAGTCGGGGTAGTCCATTGCGACTTAAAACCCGATAACATACTCCTCTTCCCCTCGCAGGACCAAGAGAATATTCATGTTATTGGTGCTAAGTATCAGGTTAAGATTGCGGATTTCGGACTCTCCAGGACCAAAGACGAGGACTTCGACGCCGACTTCTGGAAGATAAAGTTCAGAGGAACGCCATTCTACATGTCGCCGGAGTCTGTGATGGGACAGATCGAGACGCCGTTGGATATATGGTCTCTTGGCTGCACCGTTATCGAGATGATAACGGGTTTGCCTGCATGGGAAAACCACGTTACCAACATACCGGAATTGATGTTCAAACTTGCGTTCCTTAAAGAATCGCCACCATTGCCTTCTGGTCTGAGTCCGCTTTGTGAGGATTTCTTGAACAAGTGTTTCGTGAAGGATCCCAGTCAGAGATGGACCGCCAACATGCTTCTCCATCATCCTTTTCTCTCTGCTCCTAAATATCCATACATGTGGTGA 942 0.4883 MASIAQTSVCSNEVFEKRSMMEMISEPVTEWEKLKLLGEGTYGTVSLAVLTAPEEAKGSLIAVKTSKPNCLESLKKEGTILDSFFGCKEILQCIWSLFTMDNNGRFVYNLIMEFAPYGSLGNFIRKQPLMESHVIVYTRLLLVGLTLVHQVGVVHCDLKPDNILLFPSQDQENIHVIGAKYQVKIADFGLSRTKDEDFDADFWKIKFRGTPFYMSPESVMGQIETPLDIWSLGCTVIEMITGLPAWENHVTNIPELMFKLAFLKESPPLPSGLSPLCEDFLNKCFVKDPSQRWTANMLLHHPFLSAPKYPYMW 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1240 313 SUPERFAMILY Protein kinase-like (PK-like) 20 307 IPR011009 -
Aed4g1240 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Aed4g1240 313 SMART serkin_6 31 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1240 313 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 29 306 - -
Aed4g1240 313 Gene3D Transferase(Phosphotransferase) domain 1 22 311 - -
Aed4g1240 313 ProSiteProfiles Protein kinase domain profile. 31 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1240 313 ProSitePatterns Protein kinases ATP-binding region signature. 37 64 IPR017441 GO:0005524
Aed4g1240 313 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 29 306 - -
Aed4g1240 313 Pfam Protein kinase domain 32 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1240 Aed-Chr4 12661384 12662325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1240 30 305 MAP Kinase Kinase Kinase AT4G36950 39.223 1.29e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed4g1240 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1240 - - gmx:102667952 442.195