Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1221 ATGCAATTTCGAAATTCTTCTCAGCAGCACCCCCAAAGCCCTAAACCCTACACCTTCTACCGCTTCGTCTTCTCTGCAATTGTGTCATTTGTAGCTAAGGGAAGAATGACGGAGAAAGTTATTGGGATTGAAGAAGCTTCTGAGCTTCCAGATTCATCTCAATCACCTGCTGATGTGCCACATAATATGGAAACAGAACAAATGACTTCTACAAATTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGAAAACACATACCTTTACTTGTGAATCTCTTCAATGTTGCTGTTAATGCTCCAGACACAGTATTTTTCCAGTATAGTGTTGCTATTACTTTTGAAGATAAACGAGCTGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAGGCTTTACCAAACATACTCTTCTGAACTTGGTGGCAAAAGGTTTGTATACGATGGAGGGAAAACTTTGTACACAGTGGGTCCTCTGCCGCTAATTAAGTATGAGTTCAAAGTGCTGCTGGAGAAATCATTTACAAAACGCAGTAGTGCCGAGTGTCCTGGTGCTAATGGAAGCCTTCACGAGGAAACTAAAAGATCCAAACATTCTTTTCAGTCAAGGACATTCATGGTGGAGATAAGTTTTGCTACCAAAATACCCCTGCAGTCCATTGCTATTTCCCTCAAAGAGGTTGAATCGGATGCCAACTCTCAAGATGCTTTGAGAGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTAACTGTGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGAAATTTCAATGATGTTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCCAGTTTTCGTCCCACACTGCGAGGATTGTCTCTCAATATGGGTAGAAACGTGTCAACAACTATTATCATAAAACCTGGATCTGTAATTGAATTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTCTGTTGACTGGGAAAAGGCCAAAAAAGTGCTTAAAAATTTAAGGGTGCAAGCAACTCATCGTAACCAGGAATTTAAAATTTCTGGGTTGAGTGAGAAACCATGCATTCAGCAACTTTTTAGTATGAAGGTTAAAAATGATGACGACAATAGTGAAGAGCAGACAGTGGATATTACTGTTTATGAATATTTTGCCAAACACTGTGGCATAGAGCTGACCTCATCTGCTTATCTACCATGTCTTGATGTTGGGAAACCAAAACGGCCCATCTATCTTCCATTGGAGCTATGTTTACTTGTTTCCCTCCAACGGTATACAAAGGTTTTATCTCCAACGCAAAGAGCTTCTTTACTTGAAATATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAGTGCTGTAGGAAATTACTACGATGATGATCCTGTTCTTGCTGAATGTGGCATTTCTATTGAGAAACAATTGACTTCGATTGAAGGTCGTGTTCTTGGGACACCAAAGTTGAAGAGGGAAGAGCCAATGACTGAACCGATGACAACAGTGGAGGTTTTGGGTTTGGGTAGTGCAATCAACCCACCACAGGAGCTCAATAAGTTGAAGGTTGGTAAGAATGATGATTGCATCCCCAATAATGGAAGGTGGAATTTTAATAAGAAGACACTTCTTCAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACATATCAAGGGAGCTGATTAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCTTATACTTTGATAGAGGAGGAACCGCAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTGAATAGAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATTGGTGTAGTCACACAGTGCATTTCCCCCCCTGTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCTCTGATTAAAGATAGCCCAACGATGATTTTGGGGATGGATGTCTCTCACAATTCGCATGGTCGATTAGATAGTCCATCAATAGCAGCTGTTGTTGGATCAAGAAGTTGGCCACTGATTTCAAGGTATAGAGCGTCTGTGAGAATGCAGGCATCCAAGGTGGAGATGATTAATGCTCTATACAAGCCATTGGAAAATGGGAGTGATGATGGTATTATCAGGGAATTGCTTTTAGATTTCTATGATTCAAGTAATGGACGCAAGCCAACTCAATTTATTGTATTCAGGGATGGAGTTAGTGAATCACAATTTAATCAAGTTTTGACGATTGAGCTTAACCTGATAATCAAGGCCTTTCAACATCTTGGTGAGGTTAATGTTCCCAAGTTCACTGTGATTGTGGCACAGAAAAATCATCATACTAAGCTTTTTCTGCCTAATGGTCCAGAAAATGTTCCTCCTGGGACAGTTGTGGACACAACAATCACGCATCCAAAAAATTATGATTTTTACATGTGTGCGCATGCAGGGACGCTTGGAACATCTAGACCTGTACACTATCATGTGTTACTTGATGAGATTGGTTTCTCAACAGATGACTTGCAAAACTTGATCCATTCGCTGTCCTATGTGTATGCTTTCTACCTTTTTGTTTCTCAGATGGGACAGCTTTTGAATTTTAATGATTTATCAGAAGCAGCCTCAAGTCCTGCTGCATCAGAGGGAAACATCCCCATTCCAGAGCTTCCAAGGTTGCATAAGAATGTCAGGAGTTCCATGTTCTTCTGTTGA 2880 0.4059 MQFRNSSQQHPQSPKPYTFYRFVFSAIVSFVAKGRMTEKVIGIEEASELPDSSQSPADVPHNMETEQMTSTNYSIISRNGVGTTGKHIPLLVNLFNVAVNAPDTVFFQYSVAITFEDKRAVESKGIGRKVIDRLYQTYSSELGGKRFVYDGGKTLYTVGPLPLIKYEFKVLLEKSFTKRSSAECPGANGSLHEETKRSKHSFQSRTFMVEISFATKIPLQSIAISLKEVESDANSQDALRVLDTVLRQRAANCGCLLVRQSFFHDDSRNFNDVGAGVTAVSGFHSSFRPTLRGLSLNMGRNVSTTIIIKPGSVIEFLLSNQQVKEPRSVDWEKAKKVLKNLRVQATHRNQEFKISGLSEKPCIQQLFSMKVKNDDDNSEEQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPKRPIYLPLELCLLVSLQRYTKVLSPTQRASLLEISRQKPQDRIKILKSAVGNYYDDDPVLAECGISIEKQLTSIEGRVLGTPKLKREEPMTEPMTTVEVLGLGSAINPPQELNKLKVGKNDDCIPNNGRWNFNKKTLLQPSHIDYWAVVNFSARCDTSYISRELIRCGMSKGINIERPYTLIEEEPQLRKSNPVARVERMFDLLASKLNREPKLILCVLPERKNCDIYGPWKKKCLSEIGVVTQCISPPVKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDSPTMILGMDVSHNSHGRLDSPSIAAVVGSRSWPLISRYRASVRMQASKVEMINALYKPLENGSDDGIIRELLLDFYDSSNGRKPTQFIVFRDGVSESQFNQVLTIELNLIIKAFQHLGEVNVPKFTVIVAQKNHHTKLFLPNGPENVPPGTVVDTTITHPKNYDFYMCAHAGTLGTSRPVHYHVLLDEIGFSTDDLQNLIHSLSYVYAFYLFVSQMGQLLNFNDLSEAASSPAASEGNIPIPELPRLHKNVRSSMFFC 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1221 959 ProSiteProfiles PAZ domain profile. 335 428 IPR003100 GO:0005515
Aed4g1221 959 Pfam Piwi domain 627 910 IPR003165 GO:0003676
Aed4g1221 959 Pfam PAZ domain 314 444 IPR003100 GO:0005515
Aed4g1221 959 SMART PAZ_2_a_3 311 450 IPR003100 GO:0005515
Aed4g1221 959 Gene3D - 695 959 IPR036397 GO:0003676
Aed4g1221 959 ProSiteProfiles Piwi domain profile. 627 908 IPR003165 GO:0003676
Aed4g1221 959 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 67 958 - -
Aed4g1221 959 CDD Piwi_ago-like 471 909 IPR045246 -
Aed4g1221 959 Pfam Argonaute linker 2 domain 465 498 IPR032472 -
Aed4g1221 959 Pfam Argonaute linker 1 domain 258 309 IPR014811 -
Aed4g1221 959 SUPERFAMILY Ribonuclease H-like 611 909 IPR012337 -
Aed4g1221 959 SMART Piwi_a_2 627 922 IPR003165 GO:0003676
Aed4g1221 959 Pfam N-terminal domain of argonaute 86 246 IPR032474 -
Aed4g1221 959 Gene3D paz domain 304 432 - -
Aed4g1221 959 SMART DUF1785_2 256 310 IPR014811 -
Aed4g1221 959 PANTHER PROTEIN ARGONAUTE 6 67 958 - -
Aed4g1221 959 SUPERFAMILY PAZ domain 305 464 IPR036085 GO:0005515
Aed4g1221 959 CDD PAZ_argonaute_like 310 427 - -
Aed4g1221 959 Gene3D - 522 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1221 Aed-Chr4 12203195 12212731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1221 59 959 Eukaryotic Initiation Factors Gene Family AT5G43810 34.139 1.61e-149 466