Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1213 ATGGATTCCAGCACATTCCTCAACGACCTTCCTCCTCTCAAGAGACTGAGACTCATGCAACAACAAAAACAAGAACAAGATTCATCATCTTCTTCCCCTTTACCCGCCAAAAAACGCAAAGAATCCCGAACCGCGTCTCCACCCTCTCCCACCACCACCAAAACCGTTTACTATAACTATTCCCTCCCCGCCAAGAAAAGAGTGTGGGCCCCACTTCCCCAAAGCCCACCCTCCTTCGACCTCAACGTCGAGCCCGACAACCTCGGAGACTCCGAAGACTCCGACAACTCCGACGACGACGGTGTTCTATGCTGTGTGTGCCAGAGCACGGACGGCGACCCTGCGGACCCGATAGTCTTCTGCGACGGGTGCGACCTCATGGTGCACGCCTCCTGCTACGGCGCGCCCCTCTCAAACTCCATCCCGGACGGGGACTGGTTCTGCGAACAGTGCCTTTACGAGAAGAAAAACAATAGCAATCAACAACACAATCACACTCACAGTGACAGTCACGGTCACAGCAACTGCGTGCTGTGCCCCGGCACCTCAGGGGCGATGAAGCGCACCACCATGGGCGCGTGGGCGCACGTGGTGTGTGCACTGTTCATTCCCGAGGTGTTCTTCGTCGATCCCGAGGGAAGGGAGGGGATCGACGTCTCCAAGGTTCCGGAGAAGCGGTGGTCGGAGAAGTGCTACCTTTGCCGCGACGGTGGCGGGTGTGCGCTCGTGTGCTCTGAGCCGAAATGCGGGTTGGCGTTTCATGTCACGTGCGCGCTGAAGGAGGAGCTTTGGATTGAGTACAGGGAAGGGAAGAAAGGAGGGGGCAGCAGCACCATCGTTGCTGGCTTCTGCAAGAAACACACCCAAGTCTGGGAAAAGCAACAGCAATCCGGGAAGTACAAAATTGTTGCCGCTGAAGATGAAAACTTTTGGCTTTGTGTTCTAAATCTTCACACGAAGACTGTTGATGAAAGGAATAAAGAGTTGGAGGGTATGATGAAAGGAATGCAAGACGATGTTAATATAGGAACGAAGATCATAAGTCTGTTGGTTGTAGACTTGGAGTGTGGAAGGAAGATGTGTGTTGCCAAATCATAA 1098 0.5373 MDSSTFLNDLPPLKRLRLMQQQKQEQDSSSSSPLPAKKRKESRTASPPSPTTTKTVYYNYSLPAKKRVWAPLPQSPPSFDLNVEPDNLGDSEDSDNSDDDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGAPLSNSIPDGDWFCEQCLYEKKNNSNQQHNHTHSDSHGHSNCVLCPGTSGAMKRTTMGAWAHVVCALFIPEVFFVDPEGREGIDVSKVPEKRWSEKCYLCRDGGGCALVCSEPKCGLAFHVTCALKEELWIEYREGKKGGGSSTIVAGFCKKHTQVWEKQQQSGKYKIVAAEDENFWLCVLNLHTKTVDERNKELEGMMKGMQDDVNIGTKIISLLVVDLECGRKMCVAKS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1213 365 MobiDBLite consensus disorder prediction 69 98 - -
Aed4g1213 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 168 IPR013083 -
Aed4g1213 365 MobiDBLite consensus disorder prediction 1 56 - -
Aed4g1213 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 290 IPR013083 -
Aed4g1213 365 ProSitePatterns Zinc finger PHD-type signature. 104 151 IPR019786 -
Aed4g1213 365 SUPERFAMILY FYVE/PHD zinc finger 91 156 IPR011011 -
Aed4g1213 365 ProSiteProfiles Zinc finger PHD-type profile. 101 154 IPR019787 -
Aed4g1213 365 SMART PHD_3 230 288 IPR001965 -
Aed4g1213 365 SMART PHD_3 103 152 IPR001965 -
Aed4g1213 365 Pfam PHD-finger 104 152 IPR019787 -
Aed4g1213 365 ProSiteProfiles Extended PHD (ePHD) domain profile. 173 288 IPR034732 -
Aed4g1213 365 Pfam PHD-zinc-finger like domain 175 287 - -
Aed4g1213 365 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 82 - -
Aed4g1213 365 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 96 305 - -
Aed4g1213 365 CDD PHD_BRPF_JADE_like 103 151 - -
Aed4g1213 365 PANTHER PHD FINGER PROTEINS 5 82 - -
Aed4g1213 365 PANTHER PHD FINGER PROTEINS 96 305 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1213 20 308 C2H2 Transcription Factor Family AT3G14740 49.249 2.53e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed4g1213 zf-HC5HC2H_2 2.4e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1213 K11380 - gmx:100786929 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1213 4 12069812 12072211 Aed4g1213 4 12069812 12072211 ECH