LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g1203	ATGGCGCTGCTGTGTGGTTCAACTTCCGTGACTCCAATCCTCTCTCACAACAACAACAACAACAATGTTGTCGTCACAACCTCGGCAAAATCTTCCTTTGTTGTTGGGTTCCAATCGCCGCTTCAAAAACTTACATTATCTTCTTCCTCTGTTCGAACCCTTCTGCCGGCTAAAAAAACTTACCGTGTCCGTTGCCAGCAGCAAGAGGAGTCTACTATTGTCACCACTGTCACTGAACAAGACCCACGCTTCGCGTGCGTCGAACCCGAACCCCGCTTCAAAGGCCCGGACATTTGGAATAAGAGCTGGTATCCAAAAGCTGCAGATCATGTGAATACAGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGAAGACTAGCGTCGACAATTGCTATTCACATGCGAGGGAAAAACTTGGCTACCTACACACCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTAAATGCGGAAAAGGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTACAGGAGGCACTCTGGACGACCTGGTGGTATGACAGTGGAGACATTTGCCCAACTGCAAAACAGAATTCCTGAAAGAATTGTTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGAAGGCTCGGGAGGAGACTATTCACCCACCTGAAGGTTTATAAGGGCCCAGATCATCCACATGCGGCGCAGAAGCCCATTGAGTTGCCAATAAGGGATAAGAGAATACAGTTGCAGAAATAG	762	0.4724	MALLCGSTSVTPILSHNNNNNNVVVTTSAKSSFVVGFQSPLQKLTLSSSSVRTLLPAKKTYRVRCQQQEESTIVTTVTEQDPRFACVEPEPRFKGPDIWNKSWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHMRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIVEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHAAQKPIELPIRDKRIQLQK	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g1203	253	ProSitePatterns	Ribosomal protein L13 signature.	207	229	IPR023563	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	CDD	Ribosomal_L13	117	230	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	Coils	Coil	244	253	-	-
	Aed4g1203	253	Gene3D	Ribosomal protein L13	106	249	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	Pfam	Ribosomal protein L13	115	233	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	PANTHER	50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE	72	253	-	-
	Aed4g1203	253	PANTHER	RIBOSOMAL PROTEIN L13	72	253	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	Hamap	50S ribosomal protein L13 [rplM].	117	252	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	SUPERFAMILY	Ribosomal protein L13	111	245	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Aed4g1203	253	TIGRFAM	rplM_bact: ribosomal protein uL13	111	242	IPR005823	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g1203	Aed-Chr4	11851113	11855986	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g1203	119	252	Cytoplasmic Ribosomal Protein Gene Family	AT3G07110	31.852	2.50e-07	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g1203	K02871		-	gmx:100305981	431.024

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed4g1203	4	11851113	11855986	Aed4g1203	4	11851113	11855986	ECH