Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1196 ATGGCTGAGAAAATCAACGGTGATGCGATAAACTCGACGCTGCTCCACGGGAAGTACGAGCTGGGGAGGCTGCTGGGCCACGGAACCTTCGCGAAGGTGTACCACGCGCGGCACATGAAGAACGGAAAGAGCGTGGCGATGAAGGTGGTGGGAAAAGAGAAAGTGATGAAGGTGGGAATGATGGAGCAGATCAAGAGAGAGATTTCAGCAATGAACATGGTGAAGCACCCGAACATCGTGCAGCTGCACGAGGTGATGGCGAGCAAGTCGAAGATCTACATCGCCATGGAGCTCGTCCGCGGCGGCGAGCTCTTCAACAAGATCGCCAGAGGCCGCCTGAGGGAGGAAACCGCCAGGCTCTATTTCCAGCAGCTCATCTCCGCGGTGGACTTCTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGACGACGGCAACCTCAAGGTCACCGACTTCGGCCTCAGCACCTTCTCAGAGCACCTCCGGCACGACGGCCTGCTGCACACCACGTGCGGCACGCCGGCATACGTCGCGCCGGAGGTCATCGGGAAGAAGGGCTACGACGGCGCCAAGGCGGACATCTGGTCCTGCGGCGTAATCCTCTACGTCCTCCTGGCTGGGTTCCTGCCCTTCCAGGACGACAACTTGGTGGCGCTGTACAAGAAAATCTACCGCGGCGACTTCAAGTGTCCGCCGTGGTTTTCCTCCGACGCGAGGAGGCTTATCACCAAGCTCCTCGACCCGAATCCAAACACGCGAGCCACGATCAAGAAGATCATGGACTCGTCGTGGTTCAAGAAATCCGGGCCAAGGAGCTTGGTTGGAAAGAAAAGAGAGGAACATGATTTTGATTTCGAAGAGAAGATTAAACAACAACAGGACCCGGAGCAGCATGTTTCTGCTACTACTATGAATGCTTTTCACATAATCTCCCTCTCAGAAGGTTTCGACTTGTCGCCACTCTTCGAGGAGAAGAAGAGGGAGGAGAAGGAGAAGGAGATTCGGTTCGCAACCACGCGCCCCGCGAGCAGCGTGATTTCGAGACTGGAGGAGGTAGCAAAGGCGGTGAAGTTCGACGTGAAAAAGAGCGAGTCCAAGGTTAGATTACAGGGACAAGAGCGAGGGCGAAAAGGTAAACTCGCAATCGCCGCCGATTTGTACGCCGTGACGCCGTCGTTTCTAGTGGTGGAGTTTAAGAAGGACAACGGCGACACTCTGGAGTACAACCAGTTCTGCAGCGAGGAGCTTCGGCCAGCGCTTAAGGACATCGTGTGGAGGACTTCTCCTGCAGAGAATCCTACACCCGCTTGA 1335 0.5648 MAEKINGDAINSTLLHGKYELGRLLGHGTFAKVYHARHMKNGKSVAMKVVGKEKVMKVGMMEQIKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREETARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSTFSEHLRHDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVALYKKIYRGDFKCPPWFSSDARRLITKLLDPNPNTRATIKKIMDSSWFKKSGPRSLVGKKREEHDFDFEEKIKQQQDPEQHVSATTMNAFHIISLSEGFDLSPLFEEKKREEKEKEIRFATTRPASSVISRLEEVAKAVKFDVKKSESKVRLQGQERGRKGKLAIAADLYAVTPSFLVVEFKKDNGDTLEYNQFCSEELRPALKDIVWRTSPAENPTPA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1196 444 Pfam NAF domain 310 370 IPR004041 GO:0007165
Aed4g1196 444 PANTHER - 11 439 - -
Aed4g1196 444 CDD STKc_SnRK3 18 272 - -
Aed4g1196 444 Gene3D Transferase(Phosphotransferase) domain 1 101 278 - -
Aed4g1196 444 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Aed4g1196 444 Gene3D Kinase associated domain 1, KA1 307 434 - -
Aed4g1196 444 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1196 444 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1196 444 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Aed4g1196 444 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 11 439 - -
Aed4g1196 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Aed4g1196 444 SUPERFAMILY Protein kinase-like (PK-like) 16 274 IPR011009 -
Aed4g1196 444 Gene3D Phosphorylase Kinase; domain 1 16 100 - -
Aed4g1196 444 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1196 444 CDD CIPK_C 313 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1196 Aed-Chr4 11763699 11765033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1196 6 438 CBL-interacting serine-threonine protein kinases AT4G30960 74.376 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed4g1196 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1196 - K07198 gmx:547644 777.704