Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1195 ATGCAACCCTGTAGCAGAGAAATGCAAGGCCTCAACTCCTTCTTAAACTCATCCTCACCCCAAGACCAGATCCAAAACTCAAACCATCAATTACAGCAACAACAACAACAACAACTTTCTCTCTTTGACCCAACCTCTTCCCACGACGATTTCCTCGAGCAAATGCTCTCTTCCTGCAACTCCTGGCCAGACCTCAACCCAAACAAGCCCTTATTATGGGACCCCAATTCTGACCAAGACACTAATAATAATGTCGCTAATTTCCCACCCTACGATGAGCACTCCACCTTAGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCAACACCACCACCAAAAACGCTGCTGCTCTCATGCTCCAACACCAACTCCTCAACTTGCCTCTTTCCTTGCCCGGAGGAAACGACGTCGTCGTTGACGCTTCTTCCTTCAAATCCCTCAATACAGGTGGCGATGCTTCGGTAGTCCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCGCAGGCCCGTCCTCAAACCAGACTCAGCATTTTCAACCTCCTCAGGGAAGTTCGAATCCGATGCAAGGGCAAAATTTTGGAGTGCCAGCTGGTGGTGGTGGTGCGTCGAACCAAGCTCCGGCGAGTGGCGGCGCGGCTGGTGGCTCGCCGGCTCAGCCGAGGCAGAGGGTTCGAGCAAGGAGGGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGAGAGAGAATCGCAGAGAGAATGAAGGCCCTACAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGCTAGATGAGATCATCGATTACGTGAAGTTTCTGCAGCTCCAGGTCAAGGTGCGCTTCCCGCGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTGGCTCCTCTTGTTGCTAA 927 0.5329 MQPCSREMQGLNSFLNSSSPQDQIQNSNHQLQQQQQQQLSLFDPTSSHDDFLEQMLSSCNSWPDLNPNKPLLWDPNSDQDTNNNVANFPPYDEHSTLASKFRNHQISANTTTKNAAALMLQHQLLNLPLSLPGGNDVVVDASSFKSLNTGGDASVVQALYNGFAGSLHGAGPSSNQTQHFQPPQGSSNPMQGQNFGVPAGGGGASNQAPASGGAAGGSPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVRFPRSEHEQIGRCSCCGSSCC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1195 308 MobiDBLite consensus disorder prediction 169 194 - -
Aed4g1195 308 Gene3D - 227 288 IPR036638 GO:0046983
Aed4g1195 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 281 IPR011598 GO:0046983
Aed4g1195 308 MobiDBLite consensus disorder prediction 1 47 - -
Aed4g1195 308 Pfam Helix-loop-helix DNA-binding domain 237 282 IPR011598 GO:0046983
Aed4g1195 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 287 IPR036638 GO:0046983
Aed4g1195 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 287 - -
Aed4g1195 308 MobiDBLite consensus disorder prediction 169 238 - -
Aed4g1195 308 PANTHER TRANSCRIPTION FACTOR BHLH69 40 287 - -
Aed4g1195 308 SMART finulus 238 287 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1195 Aed-Chr4 11719796 11727116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1195 210 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 84.615 1.84e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g1195 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1195 - - gmx:100806899 338.961