Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1182 ATGGAGATGCAGTGGTCAATTGTAGATGGTGCTTGTATCATTGATTCCGTGGATTTGGGACCCAACAACTACATGGGGCACAATAGAACAGTATCAAGATCAATTCAAGAACTTGTTTATGTCTTTGATTCCATGGACGAGATTAATAGCAGAATTTTAGCATCATGTGAAGTTGGTGAGCACAGTAGAGCAGTATCAAGAACAAATGGAGAACTTGTTTTTATCTTTGATTCTACTAACTTGGGTCACGATCACCGCAATATGGAGAACAACGATGGAACTTTAAGAGTGATTCCTGTAAATCAAGAAGACTCCATTAAGAATCTTGAAAGGGTCACGATCGAAGAAAAACAGCAGTCTCCAAACTCGATGTGTTCCATATGTCTCGGGACACTCTCAGTTGGTTCAGAAGCAGTTCGTATACCCGATCCCTGTTCGCATGTCTTTCATCAACGTTGTATCACAAAATGGTTCAACATCAGTAACACATGTCCTTTGTGTCGCAGGACCATCTAG 516 0.4089 MEMQWSIVDGACIIDSVDLGPNNYMGHNRTVSRSIQELVYVFDSMDEINSRILASCEVGEHSRAVSRTNGELVFIFDSTNLGHDHRNMENNDGTLRVIPVNQEDSIKNLERVTIEEKQQSPNSMCSICLGTLSVGSEAVRIPDPCSHVFHQRCITKWFNISNTCPLCRRTI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1182 171 ProSiteProfiles Zinc finger RING-type profile. 125 168 IPR001841 -
Aed4g1182 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 170 - -
Aed4g1182 171 Pfam Ring finger domain 124 168 IPR001841 -
Aed4g1182 171 SMART ringv_2 124 168 IPR011016 GO:0008270
Aed4g1182 171 SUPERFAMILY RING/U-box 105 171 - -
Aed4g1182 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 171 IPR013083 -
Aed4g1182 171 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 66 170 - -
Aed4g1182 171 SMART ring_2 125 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1182 Aed-Chr4 11555927 11556442 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1182 106 168 C3H Transcription Factor Family AT1G14200 38.095 7.78e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1182 - K11982 pvu:PHAVU_007G098000g 99.3673