Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1163 ATGTCGTTAGTTTTTGGTTGGGTGGGGCATAGGGGGAGTTTGGGAGAGGCATTTGCATTGATCAGTTGGGCACATGAGCATTACCATATCATTCCCCAAAAGGGTGTAATTGGCGTGAAGATTACTACAACTAATCAAGCAGTTGAGGCACTTAAAATGTTGAGGGAACATAGAGATCGGTTCGACCTAGTTATCAGCGATGTGAACATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATCAGTGAGTTTTACACTCCTTTTGTCTTGACATACATTTTACCTGAGCTTTACTTATCCATATTCCAAGGTTTTGTTTTGGATCCAAACAAGGCTTCGAATGATGAGAAGGGTCCTAATATTGCTGGCGAAGGTAGTCAAGGCCAGAGATCAGAAAACAGCAATGACCCGAATAAAAGGCTCGGTAAAAAAAGAAAGGACCAAAGCGAGGAAGAAGAAGAAGACGAGGAAGAGAATGGAGATGATGAGGACCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCGGTTAATCAACTGGGTCTAGAAAAGGCTGTTCCGAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTTGCAAGCCATCTACAGAAGTATAGACTCTATCTGAAAAAGGCAGCGCAGCAAGCTAACATGGTTGCTGCAATGGGTGGTAGTGACCCTTACCTCCGTATTGGTTCATTAGATGGATACGGAGATTTTTGCACCTCGTCTGGATCTGGAAGGATCTCAAACACTACATTACCGTCCTATGCATCTACTGGAATTTTCAGCAGGCTGAATTCCCCGGCTGGCTTGAACATGAGAGGAATTAGTTCTCCTTCACTTATCCGGCCTGTTCAGTCTCAAAACATCAACACACTTGGAAACATTCAGCCATCCATTTTTCCCACAAATCAAAGCTCGAGTTTGTTACAAGGAATTCCGACGTCAATCGAGCTTAACCAATCAAAGCAAAGCAACTGTACCACTGGAATATCACAGTTGAATAATCAAGTTGATTCTAGTGGTTTTACTGTTAATGGTGGTGCAAGCAATTCTCTACCATGTGTCTCAAATAATAATCATATAATGTTACAAGGAAATCCACAGCAAATGCATAATACCCTAGGAGCATTTAGAAACCAGTCTTCTATTCGAGTGGCTTCTTTGAGTGCCGAATCTTTTGACATGGGAATATGCGGTTCTTCTAATATGTTGGATTACAATCGGTGTAATGAAAACTGGCAGAATGCAGCTCAACTGTCTAAATTTTCCACCAATTCTTTGCCAATGTGTGAGCCTTTCAGCAATGACCAATTGCCTCCCACTGGCATCAATGTTTCCAACTCGAGTACTCATGTTGGCAACAGTGCAGTTGATTTTTCTTCTAGAATGGGAATTCCCATTCCTTTGGAGAATGCCAGAAACGAGCTGCGGTGCCAAGAAGGCTTGATTGGGAATATCGTACAGCCTTCAAGTTACACACCACAACAACAACGGTGGGAAGAACATAAACTGGATTATAACCAAAACATGAGTCGTCCCTTTAATCCTGTAAATCCGCATGCTTCTTCCAGTGGAGTAACAAGTTCTATGGGGCATGGTTTAAACCAAAACAATACAATTTGTAGCAATAGAGTTGATGCATCTTTGGTTGGCCAACTAAATGGGGCGGCATCCTCATCAATCGGTCGGTGCACTGAAGCTGAGAAATACTCTTCAGACATTCGAATGAAGTCAAACGAAGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTGTGCAGAACACTTTTGGGACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAAAATGAATTGACATTGTTGGATGGAGAAATGGGATTTGATGCCTACCCTGTTGGATCATGCAACTGA 1989 0.4263 MSLVFGWVGHRGSLGEAFALISWAHEHYHIIPQKGVIGVKITTTNQAVEALKMLREHRDRFDLVISDVNMPDMDGFKLLELVGLEMDLPVISEFYTPFVLTYILPELYLSIFQGFVLDPNKASNDEKGPNIAGEGSQGQRSENSNDPNKRLGKKRKDQSEEEEEDEEENGDDEDPSAQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAQQANMVAAMGGSDPYLRIGSLDGYGDFCTSSGSGRISNTTLPSYASTGIFSRLNSPAGLNMRGISSPSLIRPVQSQNINTLGNIQPSIFPTNQSSSLLQGIPTSIELNQSKQSNCTTGISQLNNQVDSSGFTVNGGASNSLPCVSNNNHIMLQGNPQQMHNTLGAFRNQSSIRVASLSAESFDMGICGSSNMLDYNRCNENWQNAAQLSKFSTNSLPMCEPFSNDQLPPTGINVSNSSTHVGNSAVDFSSRMGIPIPLENARNELRCQEGLIGNIVQPSSYTPQQQRWEEHKLDYNQNMSRPFNPVNPHASSSGVTSSMGHGLNQNNTICSNRVDASLVGQLNGAASSSIGRCTEAEKYSSDIRMKSNEAYILEQMKSQDGFVQNTFGTLDDIMGAMVKREQNELTLLDGEMGFDAYPVGSCN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1163 662 MobiDBLite consensus disorder prediction 126 180 - -
Aed4g1163 662 PANTHER TWO-COMPONENT RESPONSE REGULATOR 121 643 - -
Aed4g1163 662 Pfam Myb-like DNA-binding domain 182 232 IPR001005 -
Aed4g1163 662 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 236 IPR017930 -
Aed4g1163 662 SUPERFAMILY Homeodomain-like 178 237 IPR009057 -
Aed4g1163 662 Gene3D - 176 238 - -
Aed4g1163 662 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 233 IPR006447 GO:0003677
Aed4g1163 662 Pfam Response regulator receiver domain 39 91 IPR001789 GO:0000160
Aed4g1163 662 SUPERFAMILY CheY-like 38 91 IPR011006 -
Aed4g1163 662 Gene3D - 28 95 - -
Aed4g1163 662 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 91 IPR045279 GO:0009736
Aed4g1163 662 Coils Coil 148 168 - -
Aed4g1163 662 MobiDBLite consensus disorder prediction 146 160 - -
Aed4g1163 662 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 91 - -
Aed4g1163 662 PANTHER TWO-COMPONENT RESPONSE REGULATOR 121 643 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1163 Aed-Chr4 11188519 11194956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1163 41 396 Response Regulator Gene Family AT2G25180 44.764 3.83e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed4g1163 Response_reg 1.4e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1163 K14491 - gmx:100776075 986.867