Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1154 ATGGCCTCCAATGTCCTCTCTTTTGAAACCCTCAAGAAGGATAACATTGATCTTGAAAAAATTCCCGTTGATGAGGGGAAGCCACCGGATTGGCAAGATTTCACCGGTATTGTTGTGTTGCTTTTCATCAATGCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCAGCAGCTGCTTTAATGGCTGGTCTTGCACCCAAATCCAAGGAAGAGGCATCAATTTTAGTACCAGGAGATATCATTAGCATCAAGTTGGGAGACATTGTCCCTGCTGATGCACGTCTCTTGGAAGGAGATCCTCTCAAAATTGACCAATCTGCCCTCACTGGTGAGTCCTTGCCAGTCACAAGGAACCCTGGTCAAGCAGTCTTTTCTGGTTCAACTTGCAAACAAGGTGAAATTGAAGGTGTTGTCATTGCCACCGGTGTCAACACCTTCTTTGGTAAGGCTGCACACCTTGTAGATAACACCAACAATGTTGGTCACTTCCAACAGGTGTTGACATCCATTGGTAACTTCTGCATTTGCTCAATTGCCGTGGGTATGGTGATTGAGCTCATTGTCATGTACCCCATCCAGAGGAGGACTTATAGAGATGGTATTGACAACTTGTTGGTGCTTCTCATTGGTGGTATCCCAATAGCCATGCCAACTGTCTTGTCAGTCACCATGGCTATTGGGTCCCACCGTTTGTCCCAACAAGGGGCCATCACCAAGAGGATGACAGCCATTGAAGAAATGGCAGGCATGGATGTGGCCACTGTGATTGCTGTGTATGCACATTGGGACTTTGCCAGAATCAATGGAATTGGATGGGGATGGGCTGGTGCAATATGGATCTACAGCCTTATTACCTATATCCCTCTTGACATCCTCAAGTTTTTGATCCGTGTGGGACTCACAGGCAGTGACTGTGACAGCATGCACCAAAACAAGGATTAG 948 0.4641 MASNVLSFETLKKDNIDLEKIPVDEGKPPDWQDFTGIVVLLFINATISFIEENNAGNAAAALMAGLAPKSKEEASILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRNPGQAVFSGSTCKQGEIEGVVIATGVNTFFGKAAHLVDNTNNVGHFQQVLTSIGNFCICSIAVGMVIELIVMYPIQRRTYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVATVIAVYAHWDFARINGIGWGWAGAIWIYSLITYIPLDILKFLIRVGLTGSDCDSMHQNKD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1154 315 PANTHER CALCIUM-TRANSPORTING ATPASE 26 254 - -
Aed4g1154 315 Pfam E1-E2 ATPase 74 235 - -
Aed4g1154 315 PANTHER PLASMA MEMBRANE ATPASE 254 314 - -
Aed4g1154 315 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 251 IPR023298 -
Aed4g1154 315 Gene3D - 68 143 - -
Aed4g1154 315 PANTHER PLASMA MEMBRANE ATPASE 26 254 - -
Aed4g1154 315 Gene3D - 256 300 - -
Aed4g1154 315 Gene3D - 30 252 - -
Aed4g1154 315 PANTHER CALCIUM-TRANSPORTING ATPASE 254 314 - -
Aed4g1154 315 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 37 254 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g1154 315 SUPERFAMILY Calcium ATPase, transduction domain A 75 156 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1154 Aed-Chr4 11058307 11067025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1154 197 314 Primary Pumps ATPases AT4G30190 38.983 2.33e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1154 K01535 - mus:103999821 397.512