Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1138 ATGGCTTTCCACGACCATCTGCCGCACGAAATCACGTTCCAGCCGTTCGCGGAGGAGCAGCAGCAGCTAGGTCAGAGCCGTGACATGCAGCGGCTTCTGCCGCTCTCCGGCGGTGCGCCGACGTGGCTGAATGGCAGCAACTCGGCGACGCTCCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCCGCGACGACGACGGCGCAGCAGAACGACGGCGGCGGAGGAATGGATCATCGGAACCGCGCCGAGAGCAACTCCGAGGCGGACGATTTGGCGGAGTACAAAGCGGACATTTTAGGCCATCCTCTCTACGATCAGCTCCTATCGGCGCACGTCTCGTGCTTGAGAATCGCCACGCCCGTTGACCAGCTTCCGCGGATCGACGCCCAGCTTCAACAGTCGCAGCGCGTGGTTGACAAATACTCCGCTATCGGAAACGGCGTCGTCGATGACAAAGACCTCGATCAATTCATGCTGAGAGGACCTTCCTTTCCTGATTTTCCGGAATTTGTTTTGAAAAACAATAAAAGAAAGGGTACTGTTTGTCGATTCCGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAATCTCTACAAAGCTTGA 675 0.5556 MAFHDHLPHEITFQPFAEEQQQLGQSRDMQRLLPLSGGAPTWLNGSNSATLRQQNFLHLQPESATTTAQQNDGGGGMDHRNRAESNSEADDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSAIGNGVVDDKDLDQFMLRGPSFPDFPEFVLKNNKRKGTVCRFRRIMLYCSVLSKNNCNNMSVFMPWKLLWLVGSWSNLYKA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1138 224 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Aed4g1138 224 Pfam KNOX1 domain 95 136 IPR005540 GO:0003677|GO:0005634
Aed4g1138 224 MobiDBLite consensus disorder prediction 64 89 - -
Aed4g1138 224 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 159 - -
Aed4g1138 224 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1138 Aed-Chr4 10824456 10833219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1138 64 159 Homeobox Transcription Factor Family AT5G25220 58.095 1.11e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1138 - - gmx:100803034 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1868 6 21870188 21877388 Aed4g1138 4 10824456 10833219 PCT