Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1132 ATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTCCATCGATGCTTGGATTCAAATTCAAATTCAAATTTATCTTCTTCACATGTCTCCTCCACAAGGCGTTCTTCTTTCTGTTTGTATGCTAGTAACCATGAATGTCGTCTTTCCTCCTCATCCTCTTTACTGAGATTGGATGACAAATTCAGAGTACAAAGGATGTCAGAAAACAAAAGGTGTAACAATGTAGGAACAAGCATAGCAGAGTTGCACACAGAGGCATATGGGTCAAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTTAGGGTTGGAGAGATACTTATCCATCTTCCTTGTGCACACAGGTTCCATGACAGATGCTTGAAACCATGGTTGGAGAATAATTCTCATTGTCCATGCTGCAGAACCACCATTCTTTCCCTCTAG 492 0.4268 MAGMLPGVECARRRRFHRCLDSNSNSNLSSSHVSSTRRSSFCLYASNHECRLSSSSSLLRLDDKFRVQRMSENKRCNNVGTSIAELHTEAYGSKKSGSRRFSWTKWSWKASEQEDCAVCLESFRVGEILIHLPCAHRFHDRCLKPWLENNSHCPCCRTTILSL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1132 163 SMART ring_2 116 156 IPR001841 -
Aed4g1132 163 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 93 159 - -
Aed4g1132 163 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 93 159 - -
Aed4g1132 163 Pfam Ring finger domain 115 157 IPR001841 -
Aed4g1132 163 SUPERFAMILY RING/U-box 101 161 - -
Aed4g1132 163 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 60 - -
Aed4g1132 163 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 60 - -
Aed4g1132 163 CDD RING-H2_PA-TM-RING 115 157 - -
Aed4g1132 163 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Aed4g1132 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1132 Aed-Chr4 10737334 10738950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1132 111 160 C3H Transcription Factor Family AT1G49850 58.000 2.34e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1132 - - gmx:100527583 260.381