Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1129 ATGATGATCACACCACCAATTTCAGTGTTTGTAATTCTTTTCCTACTGAACCAGCTTGCATACCTGGCTATTAAATTGTCTTCCTTTTTGGAAAGCATTTGTGAAAACACAGTGGTTGCAGACAAGAAACAGAATCTGATGAATTTCGTCTCGGCTCTTCGGTCTGGAGAATGGTCTGACATTGGAGAACGCCCTTACATGGAGGATACTCACATCTGCATTGCTGATTTGGCAAAGAAGTTTAATTATGATGTACTTTCTGAGGATGCTGTTTCCTTTTATGGTGTAAGCCATCTACCCCATTATGCTATTTGCCTGTTGTCCTTACTTGTAGCCAATGCCGGAGATTGCCGAGCTGTCCTGTCTCGCCATGGAAGGGTCATAGAAATGTCCAAAGATCATAGGCCGAGCTGCATCAGTGAAAGGACACGTGTCGAGTCCCTTGGTGGCTTCGTTGACGATGGTTACCTGAACGGCCAGTTAGGCGTCACTCGAGCTCTTGGAGATTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGGCCTCTGAGTGCTGAACCCGAACTTAAATTGATGACATTGACCAAAGAAGATGAGTTCTTGATAATTGCCAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGAGAAGCAGTGCTGCAAGGAAATAGTAGAGGAAGCAATACAGAGAGGTTCAACAGATAACTTGACAGTTGTGATGGTGTGTTTTAACTTAGATCCTCCACCACCTGTGGTTGTTGTGAAAAGAACAAGAGTAATAAGAAGAACCATATCTGCAGAGGGACTTCAGAATCTTAAATGCCTGCTAAAAGAATAA 888 0.4324 MMITPPISVFVILFLLNQLAYLAIKLSSFLESICENTVVADKKQNLMNFVSALRSGEWSDIGERPYMEDTHICIADLAKKFNYDVLSEDAVSFYGVSHLPHYAICLLSLLVANAGDCRAVLSRHGRVIEMSKDHRPSCISERTRVESLGGFVDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKQCCKEIVEEAIQRGSTDNLTVVMVCFNLDPPPPVVVVKRTRVIRRTISAEGLQNLKCLLKE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1129 295 ProSiteProfiles PPM-type phosphatase domain profile. 1 260 IPR001932 -
Aed4g1129 295 CDD PP2Cc 109 260 IPR001932 -
Aed4g1129 295 PANTHER PROTEIN PHOSPHATASE 2C 27 96 IPR015655 GO:0004722|GO:0006470
Aed4g1129 295 PANTHER PROTEIN PHOSPHATASE 2C 108 281 IPR015655 GO:0004722|GO:0006470
Aed4g1129 295 SMART PP2C_4 44 258 IPR001932 -
Aed4g1129 295 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 27 96 - -
Aed4g1129 295 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 108 281 - -
Aed4g1129 295 SUPERFAMILY PP2C-like 47 261 IPR036457 -
Aed4g1129 295 Coils Coil 227 247 - -
Aed4g1129 295 Gene3D - 97 266 IPR036457 -
Aed4g1129 295 Pfam Protein phosphatase 2C 108 252 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1129 Aed-Chr4 10714075 10719922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1129 24 293 PP2C-type Phosphatase Gene Family AT2G25620 45.075 1.46e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Aed4g1129 PP2C 7.7e-49 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1129 K14803 - gmx:100813157 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1859 6 21820423 21823833 Aed4g1129 4 10714075 10719922 PCT