Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1110 ATGGAGAAGAAAAAGCAGGTAGGAGTAGGAGAAACAAGTGAAGATAGAGGAAATCATAAGAGAGTTGAAGATAAAAGCCACACACTGTATGATGATGATACCCTGGGGTTTATATTAACAGCTCAAGAGTTGAAGGATGAAGGGAACAAACTTTTCCAGAAGCGCGATGCCAGAGGAGCATTGGAAAAATATGAGAAGGCCCTCAAATTGCTTCCAAGAAATCATGTAGATGTTTCGTATGTGCGGAGTAACATGGCTGCGTGCTACATGCAGATGGGAATCAGTGAGTTTCCTAGAGCAATCCATGAATGCAATTTGGCTCTTGAAGAATCACCAAAATATAGTAAAGCTCTGATGAAGAGGGCGAGGTGCTACGAGGCTTTAAATCGGCTGGATTTAGCGCTGAAAGATGTTAGCACTGTTTTGAAGATCGAGCCAAATAATATCATGGCATTGGAGGTCTTGGGGAAGGTGAAGCTCTCACTTCAAAATAGGGGATTAGTAATAAATGATTCAGATATTGAGTTGCCTCCAGATTATGTTGAAGCTTTTACTTTGCCTCTGGAAAAATTAGTGAAACAAAAGTCACACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGGACCCTAATAAAGTTGAAGAGAAGAAAGCTGAGGAAAGCATTGTAGTAAAGAAGGTCGAGGGAAATCCAAGAGAGAAGAAGGCTAACAAATCTAAAAAGAAGAAGGCCAAGGAAAAAACTGATGAGAAGAAGGATGATGTTAAGAAGGTAATTGAGGAAAAAAGTAATGGTGGAAGTGAAGATATACCTAAGAAAACGGCAAAACTTATTGTTGGTGAGGATATAAGATGGGCTGAATTGCCACCTAATTGCAGCCTCCTTCAGCTGAGAGATGTTATTTGCAACCGGTTCCCTAGAATAGGAGCAGTTCTTGTCAAATATAAGGACGAAGAGGGTGATCTGATCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAATGGGATCAGAGGGTTCTATCCGGCTGTACATAGTGGAAGCTATTCCCGATCATGCTCCATTATTTAAGAAATTTAATGTGAAGAATGGAGAAAAGGCTAAGATTGGTAATTCTCCTGTGAAGGGTTCTGTGGTGAAAGCGAAGGACATTATCAGCTCGTCTTGCATTGAGGATTGGATAATTCAGTTTGCCCAACTGTTCAAGAACCATGTAGGGTTTGACTCTTCTCACAAATATTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTGGAGGAGACAATTGCGAGCGAGGAAGCACAAGGCATATTTGACATTGCTGCAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTGCACATGTCCCAAGCAAGGAAGAAAGTGTATTTCACAGAAAAAGATTCTTCTAAAGAGCATATGCATGAACAAATCAAAAGTTCGTATGAATGGGCGTGGAAAGAATATGCAAAAGCCGGGGAAAAATATGAAACAGCCATTGATATTAAGCCGGATTTTTATGAAGGCTTCCTGGCTCTAGGACAGCAGCAGTTTGAGCAAGCAAAACTTTCTTTGGATCATGCACTCTGTAGTAATGTAGATTTAGCAACATGGCCCACCACCGAGGTTCTGCAGCTTCACAACAATGCCGAGGAAAATATGGAGAAAGGAATGCGAATATGGGACGAATCGGGAGAGCAACAGTTGAGTGAAACCTCTGATCTGAAGGATATTAGATCACATTTGCAGACCATGGGATTGGATGTGCTATTCAAAAACATGTCATCAGATGAAATTGCTGCACAGGCGGCAGATATGAGGTCTCAAATAAATCTTCTGTGGGGTACCATGCTATATGAACGCTCAATATTGGAATTCAAAATAGGGCTACCAGTATGGCATGAAAGATTGGAAGTTGCATCTAAGAAATTTGAACTTGCAGGAGCTTCTGCAACAGATATAGCTGTAATGTTAAAGAACCACTGTTCAAATAACACTGCTGTAGATGATCCTGGATTCAAAACTGATGAAATAGTACAAGCTTCATGGAATGAGATGCATGATGCTAAAAAGTGGCAGAGAGGTGTTCCATCGTTTCGTTTGGAGCCCTTAATAACAGAGCCAACACCCACATGGGTTGCTTCTGTGCCTGAAATGCTATTGTCATCATTAAGGTTTCTATGCCTACTTTCAATAGTTCAGAGTCAACACTCACATTGCGCGGAAATGTTCCAAGAATGTAAAAGTTTGCAAGTTCCTCAACAGGTCGGGAAGACGGAGTTGCAGAAATTACCTTTTAGATACTCTCTGCCTTTGCTCACATTGCCTTCCCTTTATGGATAG 2370 0.4105 MEKKKQVGVGETSEDRGNHKRVEDKSHTLYDDDTLGFILTAQELKDEGNKLFQKRDARGALEKYEKALKLLPRNHVDVSYVRSNMAACYMQMGISEFPRAIHECNLALEESPKYSKALMKRARCYEALNRLDLALKDVSTVLKIEPNNIMALEVLGKVKLSLQNRGLVINDSDIELPPDYVEAFTLPLEKLVKQKSHKKKKNKEKVKDPNKVEEKKAEESIVVKKVEGNPREKKANKSKKKKAKEKTDEKKDDVKKVIEEKSNGGSEDIPKKTAKLIVGEDIRWAELPPNCSLLQLRDVICNRFPRIGAVLVKYKDEEGDLITITSDEELRWAEMGSEGSIRLYIVEAIPDHAPLFKKFNVKNGEKAKIGNSPVKGSVVKAKDIISSSCIEDWIIQFAQLFKNHVGFDSSHKYLDFHELGMKLYSEAVEETIASEEAQGIFDIAAGKFQEMAALALFNWGNVHMSQARKKVYFTEKDSSKEHMHEQIKSSYEWAWKEYAKAGEKYETAIDIKPDFYEGFLALGQQQFEQAKLSLDHALCSNVDLATWPTTEVLQLHNNAEENMEKGMRIWDESGEQQLSETSDLKDIRSHLQTMGLDVLFKNMSSDEIAAQAADMRSQINLLWGTMLYERSILEFKIGLPVWHERLEVASKKFELAGASATDIAVMLKNHCSNNTAVDDPGFKTDEIVQASWNEMHDAKKWQRGVPSFRLEPLITEPTPTWVASVPEMLLSSLRFLCLLSIVQSQHSHCAEMFQECKSLQVPQQVGKTELQKLPFRYSLPLLTLPSLYG 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1110 789 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Aed4g1110 789 MobiDBLite consensus disorder prediction 1 25 - -
Aed4g1110 789 Pfam PB1 domain 274 334 IPR000270 GO:0005515
Aed4g1110 789 ProSiteProfiles PB1 domain profile. 271 348 IPR000270 GO:0005515
Aed4g1110 789 CDD PB1 278 345 - -
Aed4g1110 789 MobiDBLite consensus disorder prediction 206 234 - -
Aed4g1110 789 PANTHER PROTEIN PHOX3 3 714 - -
Aed4g1110 789 Coils Coil 240 260 - -
Aed4g1110 789 Gene3D Tetratricopeptide repeat domain 38 170 IPR011990 GO:0005515
Aed4g1110 789 SUPERFAMILY TPR-like 436 537 IPR011990 GO:0005515
Aed4g1110 789 SMART PB1_new 269 348 IPR000270 GO:0005515
Aed4g1110 789 SUPERFAMILY CAD & PB1 domains 271 346 - -
Aed4g1110 789 Gene3D - 272 351 - -
Aed4g1110 789 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Aed4g1110 789 PANTHER PROTEIN CLMP1 3 714 IPR044517 -
Aed4g1110 789 SUPERFAMILY TPR-like 41 164 IPR011990 GO:0005515
Aed4g1110 789 MobiDBLite consensus disorder prediction 194 253 - -
Aed4g1110 789 SMART tpr_5 79 114 IPR019734 GO:0005515
Aed4g1110 789 SMART tpr_5 115 148 IPR019734 GO:0005515
Aed4g1110 789 SMART tpr_5 41 74 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1110 Aed-Chr4 10435292 10439638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1110 24 148 Calmodulin-binding Proteins AT3G25230 32.374 3.61e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1110 - - gmx:100820306 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1844 6 21724652 21728592 Aed4g1110 4 10435292 10439638 PCT