LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g1100	ATGAGGCAGTCTTTTGATCCTTCATCTTTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAAGCAGGGAATGGTGCATGGGAGGCTTTGTCTGGATCTGATACTTACCATGCTTCGTCGGATGCTAGCCTCTTTTCTAGCTCGTTACCTGTTCTTCCACATGAAAAATTGAACTTGAATGAAACTGCAAATGGTTATCAATCTATTGACAACATCTCATCCGGCTTTAAGAAGCTCCATCAAGATGCAGAGGGCAATGGTTCACTTGAAGACAGTGATACTCATACTCATGCAATTGGATCTGCCCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATTATGGATGATTTTGACCTAAGTGGTTTGCCTGGTTCTCTCGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACCGATCTACAGGAAGGTCTCACTGTGGGTATGTCTAAGTTAAGCTTTGCTGATAGTACCATTGGCAATGGTTTGCCACAATATTCTATTCCCAATGGTGTGGGAACTGTTGCAGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAGCTGAGAGCCCTTTTTGAGCAATACGGTGATATTAGAACCCTGTATACTGCATGCAAACATCGGGGATTTGTAATGATATCCTATTATGATATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCACTTCTCAATACCAAAGGATAATCCATCAGATAAGGATATCAACCAAGGAACATTGGTTGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATTTTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAATTTTATGATGTCAGAGCTGCCGAAGCAGCACTTAAATCATTAAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTAGAAATTTGATGCTTCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGTTTCCGATACCAAGTTGGTTCACCTGTAGCTAACTCTCCTCCAGGTAGCTGGTTACAGTTCAGCAGCCCTGTTGAGCAGAATTCAATGCAATCTATCAACCATTCTCCTGGTTCTAGGATCATGAGCCCAACAACAGGCAATCATTTGCCTGGATTAGCTTCAATTTTGCAGCCACAAGTATCTAACGCTGTGAAGGCTGCTGCTATTGACAATGACTTGGGAGGGGGCAGTCAAGGAGAGCACATATTTACCGGCATGAATTCATCACACGGAGCTACTACTTTCCACTCGCATTCACTTCCAGAGCCAAAATTCAACCAATATCGTGGAGCATTGTCCTCAATTGGTCCATCAACATCAAATGGATCCTCGGTGGAAACTTTGTCTGGGCCACAGTTTCTTTGGGGAAGCCCAACTCTGTACTCGGAGCATACCAAACCTTCAGCTTGGCCAAGACCATCTGTGGGGCATCCATTTACATCCAACGGAAAGAGCCATGCCTTCCCATATTCAACTCAGAATAGTTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCATGTCGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCTGAGTCATCTGAATCTTCATTCATGAATAATGTTGGCTATGGAGGCATGAGTCTAGGGCACAATGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATCCTAACATTACTATCCCCAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTCTTTTTGGGAAATGGTCCATATCCAGGATTGCCACCTACCACTTTGGAGAGTTTGGCTGACCGTGCTCGGAGTAGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAGCAATTTCAGCTCGATTTGGATAAGATTAAAATCGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCCATCGATGAAAATCACAGGGGTACTTATGATTTTCTTTACCTGCCAATTGACTTTAAGAATAAGTGCAATGTGGGCTATGCATTTATCAACATGCTGTCACCCGCTCTTATCATTCACTTCTATGAGACATTCAATGGTAAGAAATGGGAGAAATTTAATAGCGAAAAAGTTGCTTCTCTGGCCTATGCTCGAATCCAAGGAAAGACTGCTCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGGTGCCGCCCTATTCTCTTCCACTCCGAGGGTTCTGAAACTGGTGATCTGATTGTACAAGAGCATCTTCCCTCCAACTCCAACAATCTAAACATTCAGTTTCCAAGGCAAAATGAGTTGTTCTATTCAAGTGATTATGCTGGGAGTCCTCCAAAGTCAGGCCCTTCTACAAGCTTGGATACAAATTAA	2598	0.4261	MRQSFDPSSLGPSKIPSIKIPGKAGNGAWEALSGSDTYHASSDASLFSSSLPVLPHEKLNLNETANGYQSIDNISSGFKKLHQDAEGNGSLEDSDTHTHAIGSALPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDLQEGLTVGMSKLSFADSTIGNGLPQYSIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGSWLQFSSPVEQNSMQSINHSPGSRIMSPTTGNHLPGLASILQPQVSNAVKAAAIDNDLGGGSQGEHIFTGMNSSHGATTFHSHSLPEPKFNQYRGALSSIGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRPSVGHPFTSNGKSHAFPYSTQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSESSFMNNVGYGGMSLGHNDGNYMVNVGGSVNPNITIPRNISDNGSSNFRMRSSPRLSPVFLGNGPYPGLPPTTLESLADRARSRWIENNGSQVDSKKQFQLDLDKIKIGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPALIIHFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGSETGDLIVQEHLPSNSNNLNIQFPRQNELFYSSDYAGSPPKSGPSTSLDTN	865

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g1100	865	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	196	269	IPR000504	GO:0003723
	Aed4g1100	865	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	283	348	IPR000504	GO:0003723
	Aed4g1100	865	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	262	IPR000504	GO:0003723
	Aed4g1100	865	CDD	RRM3_MEI2_like	701	786	IPR034454	-
	Aed4g1100	865	Pfam	RNA recognition motif 2	698	794	IPR007201	-
	Aed4g1100	865	CDD	RRM1_MEI2_like	195	271	IPR034453	-
	Aed4g1100	865	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	3	857	-	-
	Aed4g1100	865	SMART	rrm1_1	700	776	IPR000504	GO:0003723
	Aed4g1100	865	SMART	rrm1_1	197	265	IPR000504	GO:0003723
	Aed4g1100	865	SMART	rrm1_1	282	350	IPR000504	GO:0003723
	Aed4g1100	865	Gene3D	-	280	379	IPR012677	-
	Aed4g1100	865	SUPERFAMILY	RNA-binding domain, RBD	700	784	IPR035979	GO:0003676
	Aed4g1100	865	Gene3D	-	185	279	IPR012677	-
	Aed4g1100	865	SUPERFAMILY	RNA-binding domain, RBD	193	356	IPR035979	GO:0003676
	Aed4g1100	865	MobiDBLite	consensus disorder prediction	1	26	-	-
	Aed4g1100	865	MobiDBLite	consensus disorder prediction	81	102	-	-
	Aed4g1100	865	PANTHER	PROTEIN MEI2-LIKE 2	3	857	-	-
	Aed4g1100	865	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	281	354	IPR000504	GO:0003723
	Aed4g1100	865	CDD	RRM2_MEI2_like	280	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g1100	Aed-Chr4	10321159	10328413	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g1100	191	389	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.561	9.26e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g1100	-		-	gmx:100800877	1624.37