Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1060 ATGAGGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATCTTGGTTTACCCTAGAGGAGCAACCAATGTTTGCTGTGCATTGTGCAACACCATTACTTCTGTTCCTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGTTGTAGGACATTGCTAATGTACACGCATGGTGCTACAAGTGTGAGATGTTCATGCTGTCAGACTCTTAACCTTGTACCAGAATCTAATCAAGTCAGCCATATACATTGTGCGAACTGCCGGACAGCACTCATGTATCCTAATGGAGCTTCCTCAGTCAAATGTGCAATTTGTCACTATATTACTAATGTCAATATGACCAATGGAAGGCTTCCAATCCCTTTACAGAGGTCAAATGGAACAGCCAACCCCGGAACAGTATCTTCTACTTCATCGTCAACGTCTCATTCTCAGAGCCAAACTGTCGTAGTAGAAAATCCTATGTCTGTTGATTCGAATGGGAAATTGGTGAGCAATGTTGTTGTGGGCGTTACAACAGATAGGAAATGA 531 0.4313 MRSQLVCNGCRSILVYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTHGATSVRCSCCQTLNLVPESNQVSHIHCANCRTALMYPNGASSVKCAICHYITNVNMTNGRLPIPLQRSNGTANPGTVSSTSSSTSHSQSQTVVVENPMSVDSNGKLVSNVVVGVTTDRK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1060 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Aed4g1060 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Aed4g1060 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Aed4g1060 176 MobiDBLite consensus disorder prediction 121 149 - -
Aed4g1060 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
Aed4g1060 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Aed4g1060 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Aed4g1060 176 Pfam LSD1 zinc finger 46 69 IPR005735 -
Aed4g1060 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1060 Aed-Chr4 9900606 9906372 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aed4g1060 zf-LSD1 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1060 - - gmx:100776644 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1060 4 9900606 9906372 Aed4g1060 4 9900606 9906372 ECH