Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1057 ATGGAGCAGTTGAAATTGGCTGCGGATTCTGAAGCCAAAGAGGATAAACCTTTGGGGCACAAGCCAAAAAATAACAATGCGCTTGAGTCTTCTGACCTTCTGAGAAAAAGAAAGATATCAGCTCGATGGAATCCGGTTGAAGCATGTCGGCCTATAATTGAAGAAGCACCTGTTTTTTATCCGACTATTGAAGAATTTGAAGACACACTCAGTTACATAGCAAGGATACGACCCCTAGCTGAACCCCATGGCATATGTAGGATTGTTCCTCCAGCTTGCTGGGCTCCACCCTGTCCTCTTAAGGAGAAAGATATATGGGAGAATACTGAATTTCCCACCCGCATTCAACAAATTGATTTGCTTCAAAATAGAGAACCTATGAGGAAAAAAAGTAGGGGGAGGAAGCGAAAACGTAGAAAGCACTCCAAAACAGGCACATGTAGGAGGAAGCCTGCCAATGCAGCTTCTGAAGCTAAGAATGCTTCCGAGTCTGAAGAGAAATTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGATAACTTTTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGGAGACAGAGTTGTTAGTGACAGTAACCATCAAAAGAGATTGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTCAGCAACCAACTGATGAAGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACAAAGAGTGACTCAGATCCATATGCCCTGTCTGGCTGGAATCTGAATAATTTTGCCCGACTGCCGGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTAAACTATTTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTGCAATCTTGGAAAATGTAATGAAGAAGCACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGATCTGGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTGAGGGAGTACCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATATCATGCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAAAATGCTGTCGAGCTTTACAGTTTACAATGCCGCAAGACATCCTTGTCACATGACAAGCTGTTATTTGGGTCTGCACTGGAAGCTGTACGAGCCCTTGCAGAGCTGGCTCTAGGAAAGGAAACTCCAAAAAATTTGAAATGCAGAAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAGTTAAGGCAAGGATAAAGCTGGAAGAAGAAAGGCTAGACTGTCTTCCAACTCATCTTAAAAAGCTGAAGATGAGCAGTGATTTTGATTTGTCCACAGAAAGAGAATGCTTCTCTTGCTTCTATGATTTGCATCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGATAGATATTCTTGTCTTAAGCATGCTAATTTCTTCTGCTCGTGCGGAGGGGAGAAAGGATTTGTTCTGCTTCGATATACTATAAATGAACTAAATACATTGGTTGAAGCATTAGAAGGAGAATCACATGCTATTGAGGTGTGGGCAAATAAAAACTCTGGAATGGTTTCCGCCAATGCCAATGAGGTTTGCATAGATAAACCAGATCTTGAGAAAGACATGTACAAAACCAAGAATTGTGAAGAACTGGAAAGCTCAACTGGCTGTGCAGGAACCAAGGATAGGTCAAATTTAAACGCACCTAGCAGTCCTAATAGTCATATTACTTCAGAGATAGTGCAGTCTGAGTCTCACCCTGTAACTTCAAGTGCAGTATATGACAGTATAGATAGTCATAATGACAATAATAATGATAAAAAGTTGGTCACAGACAACGAAGATAAAATGGATCAGGCTGGTTTTCTGGATTTGAATCTTGATGTTATCTCTGGTGAAAATGAAAATAATTTGCTGCATATTGCCAAAAAGGAAGAAGACAACATGGAACTTTGTGGTGAGGGTAACTTATCAAACTCGTTTTCTGTTCTAAAGACAGATTTTTCATTGTGTTCAAGGGTTCTTCACAATTATTGTACATTTGATGGTGGAAAAATTGAGATGGATCTGCAAATGGATTCAGATTCAGGAAAGCAGCACAACAATCTATTTGAAAGGGAAGTCATAGACACCACACATACTAGTATATCTTTGACAGACGAAAGCTGCTTAGTGCAAATGTTCGGTACTTCTGTCAAGCCTGTAAGTTTGGGATCTGTTGTTTATGGAAAGCTCTGGTGTAGTAAGCAAGCACTATATCCAAAAGGATTCAAGACTCAAGTCAATTTCTTTAGCATTCTTGATCCAACAAGAATCTGTAGCTATATTTCTGAAGTGATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTAACCATGGAAGAATGTCCAAGTGAGGCTTTCACAGACACCTCAGCAGATAGTTGCTGGGAATCAGTTCTAAAGAGATTACATCATGAAATCATGAGGCGAAGGAGTCTAGGTGAACAAGATCTTCCTCCCTTAGAGCTCCTGAAAAGCATTAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCTATTATTCAGGAAATTGAAGCTCAAGATCCCAGCCATCTGTGTGTAGAGTACTGGAATCACAAAGTTGTTCCTTCGGGCAGTGTCACTGATAACTTCACATATGGTTCCAGTAGCTCTTCAAATACCAAAATCTTTGGTATTGATTTGATTAAGCAGGACAAGGATAACACCCTTGAAGAGATGAAATCAATACTGCAAAAGGCAAGTCCTGTTGAGTTAAGCACAATGCACAAGTTACTCAACTCTGATGCACAGTGCTGTGAATGGAGAGTGGCATTGAAAGCACTGATGGATGATGAGATCCAAAACGCTTGTCAATAA 3090 0.4097 MEQLKLAADSEAKEDKPLGHKPKNNNALESSDLLRKRKISARWNPVEACRPIIEEAPVFYPTIEEFEDTLSYIARIRPLAEPHGICRIVPPACWAPPCPLKEKDIWENTEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKHSKTGTCRRKPANAASEAKNASESEEKFGFQSGSDFTLKDFQQYDNFFKECYFGLKDANGDRVVSDSNHQKRLEPSEEEIEGEYWRIIQQPTDEVEVYYGADLETGALGSGFPKASSLTKSDSDPYALSGWNLNNFARLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAAILENVMKKHLPDLFEEQPNLLNDLVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVRALAELALGKETPKNLKCRSVCGKDGDLTKAVKARIKLEEERLDCLPTHLKKLKMSSDFDLSTERECFSCFYDLHLSAVGCECSPDRYSCLKHANFFCSCGGEKGFVLLRYTINELNTLVEALEGESHAIEVWANKNSGMVSANANEVCIDKPDLEKDMYKTKNCEELESSTGCAGTKDRSNLNAPSSPNSHITSEIVQSESHPVTSSAVYDSIDSHNDNNNDKKLVTDNEDKMDQAGFLDLNLDVISGENENNLLHIAKKEEDNMELCGEGNLSNSFSVLKTDFSLCSRVLHNYCTFDGGKIEMDLQMDSDSGKQHNNLFEREVIDTTHTSISLTDESCLVQMFGTSVKPVSLGSVVYGKLWCSKQALYPKGFKTQVNFFSILDPTRICSYISEVIDAGFLGPLFKVTMEECPSEAFTDTSADSCWESVLKRLHHEIMRRRSLGEQDLPPLELLKSINGHRMFGFLLPSIIQEIEAQDPSHLCVEYWNHKVVPSGSVTDNFTYGSSSSSNTKIFGIDLIKQDKDNTLEEMKSILQKASPVELSTMHKLLNSDAQCCEWRVALKALMDDEIQNACQ 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1057 1029 MobiDBLite consensus disorder prediction 624 680 - -
Aed4g1057 1029 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Aed4g1057 1029 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1027 - -
Aed4g1057 1029 MobiDBLite consensus disorder prediction 122 166 - -
Aed4g1057 1029 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Aed4g1057 1029 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Aed4g1057 1029 ProSiteProfiles JmjC domain profile. 268 431 IPR003347 -
Aed4g1057 1029 SMART cupin_9 265 431 IPR003347 -
Aed4g1057 1029 Pfam jmjN domain 57 90 IPR003349 -
Aed4g1057 1029 MobiDBLite consensus disorder prediction 128 147 - -
Aed4g1057 1029 ProSiteProfiles FYR domain FYRN motif profile. 794 852 IPR003888 GO:0005634
Aed4g1057 1029 SMART fyrc_3 858 963 IPR003889 GO:0005634
Aed4g1057 1029 SMART fyrn_3 808 852 IPR003888 GO:0005634
Aed4g1057 1029 MobiDBLite consensus disorder prediction 624 669 - -
Aed4g1057 1029 Gene3D Cupin 41 415 - -
Aed4g1057 1029 ProSiteProfiles FYR domain FYRC motif profile. 854 944 IPR003889 GO:0005634
Aed4g1057 1029 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1027 - -
Aed4g1057 1029 MobiDBLite consensus disorder prediction 1 31 - -
Aed4g1057 1029 Gene3D - 799 938 - -
Aed4g1057 1029 SUPERFAMILY Clavaminate synthase-like 264 451 - -
Aed4g1057 1029 SMART JmjN_1 55 96 IPR003349 -
Aed4g1057 1029 MobiDBLite consensus disorder prediction 1 22 - -
Aed4g1057 1029 Pfam F/Y rich C-terminus 856 943 IPR003889 GO:0005634
Aed4g1057 1029 Pfam F/Y-rich N-terminus 805 849 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1057 Aed-Chr4 9885361 9893323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1057 64 1021 JUMONJI Transcription Factor Family AT4G20400 47.347 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed4g1057 JmjC 2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1057 - - gmx:100801775 1870.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1057 4 9885361 9893323 Aed4g1057 4 9885361 9893323 ECH