Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1040 ATGAACCTCTTTTGTGTTGTTCTCCAATTCCCTCCAACTGCAATGAGAGGGGGTCTCAGAAAAGTTCCCATTTCAGATTTATTTAGCAGCAACAAAATGGCATCTGATCTGAATTCTGGGTTATCCAAGAAAACATTTGTTTTTGGATTGAAAGTGTGGGTACTAATGGGAATAATAGTTGGATTGTTCATCATAATCATCCTCGCGGTGCTATCAATATGTCTCACTTTACGAAAGAAGTTCAGAAGAGTTAATGGCAAGCTTCCACATAGCCATGTGGTATCTGTTTCAGACGAGATCAAAGAAATCAGAGTAGATCAAATTTCAGCAAATAATCATCCACAAAACGGTGCTTTCACAAGTCTGAATGACAAATTTGGTGACAAGGAGTCTGAAAAGGTTTTGAACCAAACAAAGAATGGGGAGAATAGTAGCCAATCAGGATCGTTTAATCATTTAGACAGAGATGCTAATGGCTCTCAATCGGGAGAAGACAGCGGAGCTAAGAGCGTTTCTGCATACAGATCTTCTTCACATCCTATAACTGCGCCATCCCCTTTGTCTGGTTTGCCTGAATTCTCTCACCTTGGCTGGGGTCACTGGTTTACATTAAGGGACCTTGAACTTGCGACAAACAGGTTTGCAAAAGACAATGTTATTGGTGAAGGTGGATATGGAATTGTTTATCAAGGTCAATTGATCAATGAGAATCCTGTGGCCATTAAGAAGCTCTTCAATAATTTAGGACAAGCTGAAAAGGAATTCAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTTCGGCTTTTGGGCTATTGCATTGAAGGCACTCACAGAGCAGTGGCTTCACGGAGCCATGCGGCAGCATGGATTTCTTACTTGGGATGCTCGGATAAAAATTCTCCTTGGAACAGCCAAAGCGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGTGTCGACGCTCAGAAGAGGTGTTGGACCCGAACATCGAGACTAGGCCATCGACAAGTTCCCTTAAGCGTGCCCTCTTGACTGCTCTGAGGTGTGTTGATCCAGATGCTGGAAAAAGACCAAGGATGAGCCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCTATTCCGCGAGGGGACCGACGACGCCGAAGAAGTCAGGCAGGAAACACAGAGGTGGAGACCCAGAGGGAGAATTCCGACACTGATAAGAGTGACAATCCAGATCATAAGCCCAACAACGGCAGAAGAAACCGACGTGTGTAG 1275 0.4439 MNLFCVVLQFPPTAMRGGLRKVPISDLFSSNKMASDLNSGLSKKTFVFGLKVWVLMGIIVGLFIIIILAVLSICLTLRKKFRRVNGKLPHSHVVSVSDEIKEIRVDQISANNHPQNGAFTSLNDKFGDKESEKVLNQTKNGENSSQSGSFNHLDRDANGSQSGEDSGAKSVSAYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFAKDNVIGEGGYGIVYQGQLINENPVAIKKLFNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRAVASRSHAAAWISYLGCSDKNSPWNSQSVNLVDWLKMMVGCRRSEEVLDPNIETRPSTSSLKRALLTALRCVDPDAGKRPRMSQVVRMLESEEYPIPRGDRRRRRSQAGNTEVETQRENSDTDKSDNPDHKPNNGRRNRRV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1040 424 PANTHER OS01G0323000 PROTEIN 310 424 - -
Aed4g1040 424 SUPERFAMILY Protein kinase-like (PK-like) 188 282 IPR011009 -
Aed4g1040 424 ProSitePatterns Protein kinases ATP-binding region signature. 220 243 IPR017441 GO:0005524
Aed4g1040 424 MobiDBLite consensus disorder prediction 137 183 - -
Aed4g1040 424 PANTHER OS01G0323000 PROTEIN 34 285 - -
Aed4g1040 424 MobiDBLite consensus disorder prediction 132 183 - -
Aed4g1040 424 PANTHER RECEPTOR-LIKE KINASE PLANT 34 285 - -
Aed4g1040 424 MobiDBLite consensus disorder prediction 373 424 - -
Aed4g1040 424 ProSiteProfiles Protein kinase domain profile. 214 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1040 424 SMART tyrkin_6 214 372 IPR020635 GO:0004713|GO:0006468
Aed4g1040 424 Pfam Protein tyrosine and serine/threonine kinase 217 283 IPR001245 GO:0004672|GO:0006468
Aed4g1040 424 PANTHER RECEPTOR-LIKE KINASE PLANT 310 424 - -
Aed4g1040 424 Gene3D Phosphorylase Kinase; domain 1 195 286 - -
Aed4g1040 424 MobiDBLite consensus disorder prediction 376 417 - -
Aed4g1040 424 Gene3D Transferase(Phosphotransferase) domain 1 298 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1040 Aed-Chr4 9621545 9626949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1040 188 283 Trihelix Transcription Factor Family AT1G23540 45.361 6.28e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Aed4g1040 PK_Tyr_Ser-Thr 1.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1040 - - cpap:110815431 466.077