Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1038 ATGGAGGCTCAATTAGAGGGGAAAAATCAGTACTTGTATGCACCTGTGGTGCCAGAGATGAGCATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAATTGAATTCAGTGCCATCAGATTGTAGGAGCCGTGAGTTGTTCCCAACTACTGATCCTGAAATTCTTGCAACTGGTGATGCTTCTAACACTTTGTCTTCTGCATATGATGGGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGTTATTGATGAAGGAGGAGGGGTGGAGATGAATGATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGGTCAAGTTTACCCTATCATGGAAGGGGAGGAGAAAAGCGGAAAGAAGACGAAGATGGCCGCGAGCACTTCTTCAAGCCGGGCTGTTTGTCAGGTGGAGGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCACCGCCGCCACAAAGTTTGCGATTTGCATTCCAAGGCTACCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTGAAGAATTTGATGAAGGGAAGAGAAGTTGCCGTAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCTTCCTGATGCTACTGCAGTTAATGGGGGCCCTCTGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGCTCAGACAATATGAGAAACCAGGATGTTCTATCTCATCTGCTGAGGAACCTGGCAAGTATGGCTGGTACAATTAATGTAAGAAATATAGCATCTTTGTTAGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGAGCTGTGCAGAATGTTCCCAACACGAATTCAAATGGTTCTGAACCGTCCAGACCTTTCGATTCTTCTATCAAGATGGATGATGGTCTAATCCATCGGGACCCTCCAGAGTCTATGGTACAACGTGAGATGATTCCTGCTAATGGTATGGCTACAAAATGTATAGCTTCAGGCAGTGATGGAGGAGGAAGTTTAAAATCTCCTTCAGTACCGCCGTCCTCAAATGTACTTCTGTTAAGGGATAGCCTTCCACCCCAACCAGTTGCAGCACCGCAGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAATGTATATGATGATGTACAGGATTATGTTGGGAACACGAGGAATTCTTGTCCTCCTCTGCCTTCAGGGAATGGGTCTCTTAATCATCCATTATGGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCGCAGACGAGCAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGCTCTAGTGGAGAAGCTCAGAGTCGCACGGATCGAATTGTTTTCAAGCTATTTGGCAAGGCTCCAAATGATTTCCCCAATGCCCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAAAGCTATATAAGGCCAGGCTGTATCCTATTAACTATATATCTCCGTCTAGAAAATTCTGCTTGGGAAGAGCTATGCTACAATCTAGGATCCAGCTTGAGAAAGCTTGCCGTGTCAAATGATTCTTTCTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCCGTAGCTTTTCTGTATAATGGTCAGTTGGTCTTAGATGTACCGTTGCGCCTCAAAAGTCCACAAAGTTGTCAAATAATATGTGTTAAACCGCTTGCGATTTCTGCAAGTTCTAGTGCTCAATTAACTGTGAAAGGATTCAACCTTTTGCTGTCTAACACAAGGTTGCTGTGTGCACTTGAAGGCAAGTATCTGGTACAAGATAGTTGTTATGATTTGATTGACAGTGCTGATGCAGTCAATGGACATCATGAGCTTCAGCATCTCAGCTTCTCTTGTGATATACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGTGGAAGATAATGGTCTTAGCAGCTGTTCATTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCGGAGATCTGTAAGCTGGAGAATGTCATTGAGGCGGCAGAGACTGCTGATGACATCCTGATAAAAACTAAACTAATGGAAGAAAGGACTCAAGCATTGTCTTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCATGGCACCTGTCCAAGACCGCTTCCATTTTAATCGGTTCACGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACGTTATGTTTGAGGGCACTGTCGATACTGGAGATCATGCCTCTGCTGAGTTGGCGTTGTTAGAGATGGGTCTTCTGCACAAAGCAGTGAAAAGAAACTGCCGGCCTATGGTGGAACTACTAATGAAATTTGTGCCAGTTAAGGCTTCAGATGGTGGAGACGGTAATGAGAAGCAAGTCAACAAGTCCCCTGACAGGTTCTTATTCAGACCCGATACCGTTGGGCCTGCCGGGTTGACCCCTCTTCATGTTGCAGCAAGTATGCATGGCTTGGAAAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAACCGGGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCCTATGACTACGCATCCCTGCGGGGCTACTACTCGTACATTCAACTTGTCCAGAGGAAAACAAGCAACACAAGCAAAAGCCAACACGTGCTCGACATCCCAGGCGCCCTTGTAGATAGTAGTAACACAAAGCAGAAGCAATCAGATGGACACAGGTCATCAAAAGTTTCGAGTTTGCAGACAGAGAAGATCGAAACAACAACAGCAGCAGCAGCAGCAGCGCGGCATCATTGCAGGCTATGCCAGCAAAAGATGGCGTACGGCGGTGTGAGAAGGGCGCTGGTCTACAGGCCGGCAATGCTGTCGATGGTGGCCATCGCAGCTGTGTGCGTCTGCGTGGCTCTGCTCTTCAAAAGTTCACCCAAAGTTTACTATGTATTCCAGCCCTTCAGCTGGGAATCATTGGAGTATGGAGCAATCTAA 3132 0.4582 MEAQLEGKNQYLYAPVVPEMSMKSVGKRSLEWDLNDWKWDGDLFTATQLNSVPSDCRSRELFPTTDPEILATGDASNTLSSAYDGEGRRELEKRRRGVVIDEGGGVEMNDDGAGSLNLNLGGQVYPIMEGEEKSGKKTKMAASTSSSRAVCQVEDCRADLSNAKDYHRRHKVCDLHSKATKALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTLPDATAVNGGPLNEEKGSSYLLMSLLRILSNMHSNGSDNMRNQDVLSHLLRNLASMAGTINVRNIASLLEGSQDLVKAGTSGAVQNVPNTNSNGSEPSRPFDSSIKMDDGLIHRDPPESMVQREMIPANGMATKCIASGSDGGGSLKSPSVPPSSNVLLLRDSLPPQPVAAPQTTVGRIGLSNIDLNNVYDDVQDYVGNTRNSCPPLPSGNGSLNHPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPNALRSQILNWLSHSPTEIESYIRPGCILLTIYLRLENSAWEELCYNLGSSLRKLAVSNDSFWRTGWIYTRVQHSVAFLYNGQLVLDVPLRLKSPQSCQIICVKPLAISASSSAQLTVKGFNLLLSNTRLLCALEGKYLVQDSCYDLIDSADAVNGHHELQHLSFSCDIPNVTGRGFIEVVEDNGLSSCSFPFIVAEQEICSEICKLENVIEAAETADDILIKTKLMEERTQALSFIQEMGWLLHRSRVKVRLGPMAPVQDRFHFNRFTWLVGFSMDHDWCAVMKKLLNVMFEGTVDTGDHASAELALLEMGLLHKAVKRNCRPMVELLMKFVPVKASDGGDGNEKQVNKSPDRFLFRPDTVGPAGLTPLHVAASMHGLENVLDALTDDPGMVGTGAWKSAQDTTGLTPYDYASLRGYYSYIQLVQRKTSNTSKSQHVLDIPGALVDSSNTKQKQSDGHRSSKVSSLQTEKIETTTAAAAAARHHCRLCQQKMAYGGVRRALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGAI 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1038 1043 MobiDBLite consensus disorder prediction 450 478 - -
Aed4g1038 1043 MobiDBLite consensus disorder prediction 305 331 - -
Aed4g1038 1043 MobiDBLite consensus disorder prediction 218 237 - -
Aed4g1038 1043 MobiDBLite consensus disorder prediction 941 964 - -
Aed4g1038 1043 Pfam SBP domain 151 224 IPR004333 GO:0003677
Aed4g1038 1043 MobiDBLite consensus disorder prediction 305 325 - -
Aed4g1038 1043 SUPERFAMILY SBT domain 149 229 IPR036893 GO:0003677|GO:0005634
Aed4g1038 1043 Gene3D - 791 937 IPR036770 -
Aed4g1038 1043 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 1042 IPR044817 GO:0003677
Aed4g1038 1043 SUPERFAMILY Ankyrin repeat 808 922 IPR036770 -
Aed4g1038 1043 Gene3D - 141 212 IPR036893 GO:0003677|GO:0005634
Aed4g1038 1043 ProSiteProfiles Zinc finger SBP-type profile. 148 225 IPR004333 GO:0003677
Aed4g1038 1043 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 18 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1038 Aed-Chr4 9593027 9603723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1038 1 1042 SBP-box Gene Family AT3G60030 46.881 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed4g1038 SBP 7.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1038 - - gmx:100776125 1795.79