Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1018 ATGGCTGCTGGTGTCACTGTCAAGTCCGAGGTTCTAGAATCTGCCCCCCCTGAAGGAGTTTGTTCCAACACGGAGTCAGTGCCAGCATCTGGACCTAATGCAGTGATTCCTAGTGCAAACCAGCTTACCATCTTCTACAATGGGAGTATCTGTGTCTATGATGGAATCCCCGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCTACCGAAATGAAGAAGATTGGGTCCCAAACAACCCTCGTTTCACCTGTTCCCTCAAGGCCTTCTTCTCCACATGGAATCACTAATAATATTGCTCCCTCACAGACGAAATTCCCAATCGCACGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGTCGTGACAGGATTGGTAGCAAGGCACCATATCCTTCCTCATCAACTACAAAAGTGGCTGACAACATCGAAAACAACTTCTGTGCTGACAATGCTCCAGAACTGCTTTCCTTGAACCGATCCGAGGAGGAATTTCAGCCAACCGTCTCTGCCTCTTGA 534 0.4794 MAAGVTVKSEVLESAPPEGVCSNTESVPASGPNAVIPSANQLTIFYNGSICVYDGIPAEKVHEIMLIAAAAAKSTEMKKIGSQTTLVSPVPSRPSSPHGITNNIAPSQTKFPIARRHSLQRFLEKRRDRIGSKAPYPSSSTTKVADNIENNFCADNAPELLSLNRSEEEFQPTVSAS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1018 177 ProSiteProfiles Tify domain profile. 35 70 IPR010399 -
Aed4g1018 177 SMART tify_2 35 70 IPR010399 -
Aed4g1018 177 MobiDBLite consensus disorder prediction 127 147 - -
Aed4g1018 177 MobiDBLite consensus disorder prediction 85 105 - -
Aed4g1018 177 Pfam tify domain 37 69 IPR010399 -
Aed4g1018 177 MobiDBLite consensus disorder prediction 1 27 - -
Aed4g1018 177 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 23 155 IPR040390 -
Aed4g1018 177 Pfam Jas motif 112 136 IPR018467 -
Aed4g1018 177 PANTHER DIVERGENT CCT MOTIF PROTEIN 23 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1018 Aed-Chr4 9290898 9294677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1018 40 143 Tify Gene Family AT5G20900 46.610 1.27e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Aed4g1018 tify 9.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1018 K13464 - gmx:100306045 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2205 6 24299148 24302361 Aed4g1018 4 9290898 9294677 PCT