Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1008 ATGGCTCATTCTTCTCATAAGCTACTCCTCTTCCTTCTGTTTGCAATAATCTTCTTCTCACACACTTGTGCAATGATCAACTCTTCCAATGCTTCCACAACACTTCAAACCAATCTCTCTTCCTTGAAATCCTTCTGCACAACCACTCCATACCCAGAAGCTTGTTTCAACTCATTGAAGTTATCCATCTCAATAAACATAAGTCCAAACATAATCAATTACCTTCTTGAGTCCCTCCAAGTAGCAATATCAGAAACCACAAAGCTCTCAAATCTCTTCCACAACGTTGGACACTCAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAAGACTGCAAGGAACTGCATCAATCAACATTGGCTTCTCTGAAAAAATCATTATCAGGGATCCGTTCTTCAAACTCCAAGAACATAGTTGATGCAAGAGCATACCTCAGTGCAGCCCTCACCAACAAGAACACATGTTTAGAAGGCCTAGATTCTGCTTCTGGCACCATGAAGCCATCTTTGGTGAAATCAGTGATCAACACTTACAAGCATGTCAATGGAACTGGGAACTTCAGCACCATCACTGAAGCCATAAACTTTGCTCCAAATAACAGCATGGATAGGATAGTGATCTATGTCAAAGAAGGGGTTTATGAGGAAAATGTGGAAATCCCAAGCTATAAGACCAACATTATGATGCTTGGAGATGGAAGTGATATCACAGTCATAAATGGTAATAGGAGTGTCGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGGGCCAGAGAAGCATCAAGCAGTGGCCTTAAGGGTAAATGCAGACTTAACAGCATTCTACAGGTGTGCAATATATGGTTACCAAGACACACTCTATGTCCACTCCTTCAGACAATTCTACAGAGAGTGTGACATCTATGGCACCGTAGACTACATATTTGGAAACGCAGCAGTGATTCTACAAGAATGCAACATCATATCAAGAAAACCAATGCCTGGCCAATTCACAGTGATCACTGCACAATCCAGAGACAGCCCTGATGAGGACACCGGCATCTCGTTCCAGAACTGCTCAATCATAGCAACCCTTGATCTGTATTCCAACTCCAGTAGCTTCAAGAGCTACCTTGGGAGGCCATGGAGGGTATATTCTCGCACCGTTTACCTCGAGTCCTACATTGATGTCTTCATTGACCCTAAGGGTTGGAGAGAGTGGTCTAGTAATGCTGAGCAAGGAGCATTGGACACTTTGTATTATGGTGAGTATGATAACTTTGGACCTGGCTCTGGCACTGAGAAGCGTGTGCAATGGGTTGGGTACCATGTGATGGATTATGGTGATGCCTATAATTTCACGGTTTCGGAGTTCATCAATGGAAATGGTTGGCTTGATACTACTTCGGTTCCTTATGATGATGGCATTTGA 1416 0.4315 MAHSSHKLLLFLLFAIIFFSHTCAMINSSNASTTLQTNLSSLKSFCTTTPYPEACFNSLKLSISINISPNIINYLLESLQVAISETTKLSNLFHNVGHSNIIEKQRGAVQDCKELHQSTLASLKKSLSGIRSSNSKNIVDARAYLSAALTNKNTCLEGLDSASGTMKPSLVKSVINTYKHVNGTGNFSTITEAINFAPNNSMDRIVIYVKEGVYEENVEIPSYKTNIMMLGDGSDITVINGNRSVGDGWTTFRSATLGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTVDYIFGNAAVILQECNIISRKPMPGQFTVITAQSRDSPDEDTGISFQNCSIIATLDLYSNSSSFKSYLGRPWRVYSRTVYLESYIDVFIDPKGWREWSSNAEQGALDTLYYGEYDNFGPGSGTEKRVQWVGYHVMDYGDAYNFTVSEFINGNGWLDTTSVPYDDGI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1008 471 Pfam Pectinesterase 182 457 IPR000070 GO:0030599|GO:0042545
Aed4g1008 471 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 189 IPR035513 -
Aed4g1008 471 ProSitePatterns Pectinesterase signature 2. 302 311 IPR033131 -
Aed4g1008 471 PANTHER PECTINESTERASE 9 181 - -
Aed4g1008 471 SMART PMEI_2 37 190 IPR006501 GO:0004857
Aed4g1008 471 PANTHER PECTINESTERASE 9 181 - -
Aed4g1008 471 PANTHER PECTINESTERASE 182 470 - -
Aed4g1008 471 PANTHER PECTINESTERASE 182 470 - -
Aed4g1008 471 SUPERFAMILY Pectin lyase-like 182 468 IPR011050 -
Aed4g1008 471 Gene3D - 190 259 IPR012334 -
Aed4g1008 471 Gene3D - 260 459 IPR012334 -
Aed4g1008 471 CDD PMEI-like_3 44 181 - -
Aed4g1008 471 Pfam Plant invertase/pectin methylesterase inhibitor 41 173 IPR006501 GO:0004857
Aed4g1008 471 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 182 IPR035513 -
Aed4g1008 471 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1008 Aed-Chr4 9223748 9225939 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1008 34 471 Carbohydrate Esterase AT2G26440 52.000 1.92e-177 507