Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1006 ATGGCTTACTCAACTCATAAACTCTTCTCCCTTCTATTTGCATTGATCTTCTTCTCACATACTTGCATCCACTGCTCTTCCTCCAATGCTTCCACAACAGTTCAAGTGGATCTCTCTCCCATAATAAGATCTTTCTGCACAACCACCCCATACCCAGAAGTTTGTTTCAATTCATTGAACATCTTAACACACACAAGTAGTACAAACACAAACAACTACCTCCTTCAGTCTCTCAAAGTGGCAATATCAGAAACCACAAAGCTCTCAAATCTCTTCAACAATGTTGGAGTACTCTCAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAAGACTGCAGGGAACTCCACCAATCCACATTGGCTTCCCTGAAAAGATCACTATCAGAGATCAGTTTCTCAAACATAACCACAACTGATGCAAGAATCTACCTCAGTGCAGCCCTTACCAACAAGAACACATGCCTAGAAGGCCTAGATCATGCTTCTGGCACCATGAAGCCAGTTCTGGTGAAATCTGTGGTCAACACTTACAAGCATGTCAGTAACTCTCTTTCAATTCTCTCTAACAACCCTGAGATGGGGACTCCTGTTCACAATCGGTCCAAGGGTAAGGTGACAGGTCTCACTCCTGATCAAAACCAGTCTTTGGTTGGTGATCATCCAAAGTGGCTATCAAGCACTGACCAAGGGTTCTTTCAAGACTACTCTGATGGGGAAGAATATGACCCAAATGAAGTGATTGTTGTGGCTGCAGATGGAACTGGGAAATTCAGCACCATCACCGAAGCCATCAACTTTGCTCCAAATAACAGCATGGATAGGACTGTGATCCGTGTCAAAGAAGGGGTTTACGAGGAAAATGTGGAAATTCCAAGCTATAAGACCAACATTGTGATGCCTGGCAATGGAAGTGATGTCACTGTCATAACCGATAACAGAAGCACAGCGGTTCTTGGTGAAGGATTTCTGGCACGTGACATAGCCTTTAAGAACAGCGCAGGGCCAGAGAAGCACCAAGCAGTGGCCTTGTTGGTAAATGCAGACATAACAGCTTTCTACAGGTGTGCAATTCATGGTTACCAAGACACTTTATTTGTTCACGCCTTTAGACAATTCTATAAAGAGTGTGACATTTATGGGACCATAGATTTCATATCTGGAAATGCAGCAGTGGTTCTACAAGGATGCAACATCGTATCAAAAAAGCCATTGCCTGGCCAAGACACTATTATCACTGCACAATCCAGAGATGACCCAAATGAAAACACTGGCATCTCAATCCAATACTGCAAAATCAAAGCTGAGTTTGATGATGAATCTAGTGTCATCAAGAGCTACCTTGGGAGGCCATGGAGGGTATATTCTCGCGCCGTTTACCTTGAGTCCTACATTGAAGGCTTCATTGACCCAAAGGGTTGGAGAGAGTGGTCTAATAATAGTAATGAGCAAAGGTTGGACACCTTGTATTATGGAGAATATGACAATGTTGGACCAGGTTCCAAAACAGGTGGTCGTGTACAATGGTCAGGGTTCCATGTAATGGATTATGATGATGCCTTCAATTTCACGGGATTTGATTATCACACAAAATACATAGCTTTAGTTTTGTCAATTGTTACACTACTTACTTATAGGTGTCTTGTCACTGTCCTCTGGCTTATGGCCCTTGAGGTTATTAGTACTCAGTAG 1689 0.4292 MAYSTHKLFSLLFALIFFSHTCIHCSSSNASTTVQVDLSPIIRSFCTTTPYPEVCFNSLNILTHTSSTNTNNYLLQSLKVAISETTKLSNLFNNVGVLSNIIEKQRGAVQDCRELHQSTLASLKRSLSEISFSNITTTDARIYLSAALTNKNTCLEGLDHASGTMKPVLVKSVVNTYKHVSNSLSILSNNPEMGTPVHNRSKGKVTGLTPDQNQSLVGDHPKWLSSTDQGFFQDYSDGEEYDPNEVIVVAADGTGKFSTITEAINFAPNNSMDRTVIRVKEGVYEENVEIPSYKTNIVMPGNGSDVTVITDNRSTAVLGEGFLARDIAFKNSAGPEKHQAVALLVNADITAFYRCAIHGYQDTLFVHAFRQFYKECDIYGTIDFISGNAAVVLQGCNIVSKKPLPGQDTIITAQSRDDPNENTGISIQYCKIKAEFDDESSVIKSYLGRPWRVYSRAVYLESYIEGFIDPKGWREWSNNSNEQRLDTLYYGEYDNVGPGSKTGGRVQWSGFHVMDYDDAFNFTGFDYHTKYIALVLSIVTLLTYRCLVTVLWLMALEVISTQ 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1006 562 Gene3D - 242 533 IPR012334 -
Aed4g1006 562 Pfam Pectinesterase 247 525 IPR000070 GO:0030599|GO:0042545
Aed4g1006 562 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Aed4g1006 562 MobiDBLite consensus disorder prediction 188 220 - -
Aed4g1006 562 SMART PMEI_2 37 186 IPR006501 GO:0004857
Aed4g1006 562 Pfam Plant invertase/pectin methylesterase inhibitor 41 186 IPR006501 GO:0004857
Aed4g1006 562 MobiDBLite consensus disorder prediction 205 220 - -
Aed4g1006 562 SUPERFAMILY Pectin lyase-like 244 527 IPR011050 -
Aed4g1006 562 PANTHER PECTINESTERASE 8 528 - -
Aed4g1006 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Aed4g1006 562 PANTHER PECTINESTERASE 8 528 - -
Aed4g1006 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 188 IPR006501 GO:0004857
Aed4g1006 562 CDD PMEI-like_3 44 189 - -
Aed4g1006 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1006 Aed-Chr4 9221028 9223288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1006 44 529 Carbohydrate Esterase AT2G26440 57.624 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1006 - - gmx:102665651 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2198 6 24239086 24241380 Aed4g1006 4 9221028 9223288 PCT