Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1005 ATGGCGTTCCAAGACTTTGACATGATCAGCGAACGTCGCAGGAACGAGAACCGGCTGAAGACGAAGAAGAAGATCCTGATCGGAGTCGTCTCCGCCGTCCTCCTGGCGTGCGTGATCGGCGCGGCGGCCTTCGTAGTGGTGCAGAGGACAGGCAGCACCGGAAAGCAGCCGACCGAACTAGCACCCTCGACCATAAGCACCCACGTGGACCAAAACTCGAAGATGGTGAAGATGATCTGCGCCACGGCGGTGTATAAGGACAAATGCGAGAGCACGCTGGGCGAGGCCTTGAAGAAGGACATGAAGCTGGCGCAGCCGAAGGATCTGATCATGGTGTCCATGATACTCGCCGAGAACGAGGTGTCGAAGATCTTCGACGAGACAGCGAAGATGGACTTCGCCACCCCCCAGGAGAAGGACGCCTACAGCGTTTGCCAGGACATGTTGAACACCGCGAAGCAGGACCTCGAGCATTTGATCGCGGATGTCCACGATAGCGACTCGAACGCTCTTCTGTCCAAGGGTCCTAAGCTCAACAACTACCTCAGCGGTGTCATGACTTACCAACAGACCTGCCTTGACAATGTCCCCGACGGGAAGCTCAAGGACGACTTGAGCCACATGTTCAAGAACTCCAAGGAGCTTATTAGCAACTGCCTCGCCGTTCTTACGCAGTTCTCTTCCTTCTTCTCCATCTTCCAAGGCGCTTCGACCTTCAACCTTCCTTGGAAGAAGCCTGCTGGTGCCGCCGCCGCACATGCACCTGCTTCTGCTCCTGGTGCTGCTCCTGGAGCTGCTTCTAATTCTTCTCCTGCTTCTGCTCCTGGTGCGGCTCCCGTTGCCGCTCCCGGCCCGGTTCCTTCTTCGTTTGATGCCCCCCCCATTCCTGCTTGGTCTACCCCTATTCCCACTTGGGCTGGCCCTGCTGACTTCCTCCGATTAGACGATAAGCCCACACCTAATGTCACCGTCGCACAAGACGGCAGCGGAGACTTCAAAACCATCTCCGAAGCTTTGGCCGCCGTCCCAAAAACATACGAAGGAAGGTACGTGGTTTATGTTAAGGAAGGAGTGTACGATGAGCTCGTGACAGTGACAAGACAAATGATTAACATGACCATGTACGGCGACGGACGGCAAAAGAGTATCATCACCGGCAACAAGAATTACGTGGATGGAGTCAGGACCTTCCAAACCGCCTCATTTGTTGTACTTGGAGACGGATTCGTGGGAAAAGACATGGGATTCAGGAACACAGCCGGAGCAATAAAGCATCAAGCAGTGGCGGCGAGAATCCAAGCTGACGCAGTCATATTCTTCAACTGCGACTTCGACGGATACCAAGACACCCTATACGCCCAAACCCACAGGCAATTCTACCGCGACTGCACCATCTCCGGAACAATCGACTTCATCTTCGGCGACGCCTCCGCCGTGTTCCAGAACTGCACGATGCTGATCAGGAAACCCCTGGAGAACCAACAGAACATCGTCACCGCACAGGGGCGTCTCGACAAGCAAGCTAACACCGGGTTCGTCCTCCAGAAGTGCGTGATCAAGGCCCACGACGACCTCGTGGCGACACAGAGCGAGTACAAGAACTACCTCGGACGCCCATGGAAGGAGTTCTCCAGGACCATCATCATGGAGACTGAGATCGACGGTTTGATCCACCCCGACGGGTTTCTTCCTTGGGAAGGCAATTTCGCACTCGACACACTTTACTATGGTGAATATAACAACAATGGGGCTGGTTCCAGCACCGCTGCTAGGGTTCACTGGCCTGGGCTCAAGGTTATTTTGAAGGATGAGGCTACCACGTACACTGTTGAGGCTTTCTTGGAAGGGACATGGATCAATGGCACAGGCGTGCCTGCTCACCTTGGAATGTATACTTAA 1899 0.5477 MAFQDFDMISERRRNENRLKTKKKILIGVVSAVLLACVIGAAAFVVVQRTGSTGKQPTELAPSTISTHVDQNSKMVKMICATAVYKDKCESTLGEALKKDMKLAQPKDLIMVSMILAENEVSKIFDETAKMDFATPQEKDAYSVCQDMLNTAKQDLEHLIADVHDSDSNALLSKGPKLNNYLSGVMTYQQTCLDNVPDGKLKDDLSHMFKNSKELISNCLAVLTQFSSFFSIFQGASTFNLPWKKPAGAAAAHAPASAPGAAPGAASNSSPASAPGAAPVAAPGPVPSSFDAPPIPAWSTPIPTWAGPADFLRLDDKPTPNVTVAQDGSGDFKTISEALAAVPKTYEGRYVVYVKEGVYDELVTVTRQMINMTMYGDGRQKSIITGNKNYVDGVRTFQTASFVVLGDGFVGKDMGFRNTAGAIKHQAVAARIQADAVIFFNCDFDGYQDTLYAQTHRQFYRDCTISGTIDFIFGDASAVFQNCTMLIRKPLENQQNIVTAQGRLDKQANTGFVLQKCVIKAHDDLVATQSEYKNYLGRPWKEFSRTIIMETEIDGLIHPDGFLPWEGNFALDTLYYGEYNNNGAGSSTAARVHWPGLKVILKDEATTYTVEAFLEGTWINGTGVPAHLGMYT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1005 632 ProSitePatterns Pectinesterase signature 2. 465 474 IPR033131 -
Aed4g1005 632 Pfam Pectinesterase 321 616 IPR000070 GO:0030599|GO:0042545
Aed4g1005 632 Gene3D - 316 630 IPR012334 -
Aed4g1005 632 MobiDBLite consensus disorder prediction 254 285 - -
Aed4g1005 632 Pfam Plant invertase/pectin methylesterase inhibitor 75 221 IPR006501 GO:0004857
Aed4g1005 632 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 226 IPR035513 -
Aed4g1005 632 SUPERFAMILY Pectin lyase-like 319 625 IPR011050 -
Aed4g1005 632 PANTHER PECTINESTERASE 14 630 - -
Aed4g1005 632 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 225 IPR006501 GO:0004857
Aed4g1005 632 CDD PMEI-like_3 79 228 - -
Aed4g1005 632 SMART PMEI_2 71 222 IPR006501 GO:0004857
Aed4g1005 632 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 227 IPR035513 -
Aed4g1005 632 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1005 Aed-Chr4 9215577 9218206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1005 1 631 Carbohydrate Esterase AT4G33230 39.631 1.34e-164 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1005 - - gmx:100807628 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1005 4 9215577 9218206 Aed4g1005 4 9215577 9218206 ECH
Aed6g2197 6 24235714 24238262 Aed4g1005 4 9215577 9218206 PCT