Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1001 ATGGCTTCTTTTTCTTCTGATTCCGTTCCTCCTCTCACCGTTGTCGGATACACACACACTCACACTGACGCTACTTCGCTATCGCACGTTACTCTCGTAACTGTAACGGTCCTCGCCGTCGCCGTTACGGTTTTATTGGCTTTGTATTTCCTTCTCAGTCGCCGTAACCGTTTCCTCCGTCGCGTCTCTCCGTCTTCCGCTGCAGTGGTCTCCGTCGAAAATCGCATATCCCCGGAGACCGCTTCGTCTTCCGTTTTCGACTTGCTCCCGACGTTCACCTTCTCCTCCATCACGCGCGCCGCCGCCTCCTCCGGCGTCGGCGGCGACTGCGCCGTGTGCCTGTCGAAGTTCGAGCAGCGCGACGTTCTCCGCTTGCTGCCTCTCTGCTGCCACGCGTTTCACGCGGAATGCATCGACACGTGGCTCCGGTCGAATCTCACCTGTCCGCTCTGCCGATCCGCCGTCGGCGCGTCGGAATCCGACCTCGCGAAGGTTTTCCGGTCGTCTTCCTTCGCCGGCGCCGGCGACAGCTTCCGCCTGGAGATAGGAAGCATCAGTAGCCGCCGCGTAGGAGCTGCTTCCGGTGGCGAAGAATCGCGCGGAAGATCCTATTCCGTTGGCGCGTTCGAGTATCTCATCGACGAGGAAGCCGAGGTCGAGGTTGATGCTGCGTTGGCTTATTCTGACCGGAGAATCGTTTCCGGCGAGAAAGACGACGGTGCTCCGGTGGAATCTCCGGTAGATTCTGATCTTCCGAACTTAGCTGGCGAGGTAGGGGGAAGTAGTAACAATAGTAATGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGGTGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTTTGGGTGGAGATTACGATGTGGAAGCGAACCGCTTCGGGGATGAAATCGGTGAAATGTTTCGTTGGCTCTCTGGAGGAGTTTGA 981 0.5708 MASFSSDSVPPLTVVGYTHTHTDATSLSHVTLVTVTVLAVAVTVLLALYFLLSRRNRFLRRVSPSSAAVVSVENRISPETASSSVFDLLPTFTFSSITRAAASSGVGGDCAVCLSKFEQRDVLRLLPLCCHAFHAECIDTWLRSNLTCPLCRSAVGASESDLAKVFRSSSFAGAGDSFRLEIGSISSRRVGAASGGEESRGRSYSVGAFEYLIDEEAEVEVDAALAYSDRRIVSGEKDDGAPVESPVDSDLPNLAGEVGGSSNNSNGWLKDYVDRLSNTVSFRSSGRFFTGSSRRSDVVLGGDYDVEANRFGDEIGEMFRWLSGGV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1001 326 SUPERFAMILY RING/U-box 103 157 - -
Aed4g1001 326 MobiDBLite consensus disorder prediction 236 259 - -
Aed4g1001 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 313 - -
Aed4g1001 326 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Aed4g1001 326 Pfam Ring finger domain 109 152 IPR001841 -
Aed4g1001 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 157 IPR013083 -
Aed4g1001 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 313 - -
Aed4g1001 326 SMART ring_2 110 151 IPR001841 -
Aed4g1001 326 CDD RING-H2_PA-TM-RING 109 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1001 Aed-Chr4 9186705 9187685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1001 83 224 C3H Transcription Factor Family AT2G18650 31.527 4.33e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1001 K10663 - gmx:100804962 390.963